Mercurial > repos > iuc > humann2_split_table

comparison humann2_split_table.xml @ 1:b7b12cd9e58d draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
author iuc
date Tue, 01 Aug 2017 07:51:33 -0400
parents 880500b7f099
children 9aef81ff786b
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0:880500b7f099 1:b7b12cd9e58d
4 <import>humann2_macros.xml</import> 4 <import>humann2_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
7 <expand macro="version"/> 7 <expand macro="version"/>
8 <command detect_errors="exit_code"><![CDATA[ 8 <command detect_errors="exit_code"><![CDATA[
9 humann2_split_table 9 humann2_split_table
10 --input '$input' 10 --input '$input'
11 -o 'output' 11 -o 'output'
12 #if $taxonomy_index 12 #if $taxonomy_index
13 --taxonomy_index '$taxonomy_index' 13 --taxonomy_index '$taxonomy_index'
14 #end if 14 #end if
15 #if $taxonomy_level 15 #if $taxonomy_level
16 --taxonomy_level '$taxonomy_level' 16 --taxonomy_level '$taxonomy_level'
17 #end if 17 #end if
18 ]]></command> 18 ]]></command>
19 <inputs> 19 <inputs>
20 <param argument="--input" type="data" format="tsv,tabular,biom1" label="Gene table to split"/> 20 <param argument="--input" type="data" format="tsv,tabular,biom1" label="Gene table to split"/>
21 <param argument="--taxonomy_index" type="text" label="Index of the gene in the taxonomy data" optional="true"/> 21 <param argument="--taxonomy_index" type="text" label="Index of the gene in the taxonomy data" optional="true"/>
22 <param argument="--taxonomy_level" type="select" label="Level of taxonomy for the output" optional="true" help="if input is from picrust metagenome_contributions.py"> 22 <param argument="--taxonomy_level" type="select" label="Level of taxonomy for the output" optional="true" help="if input is from picrust metagenome_contributions.py">