# HG changeset patch
# User iuc
# Date 1612549171 0
# Node ID 90a095e18acb2d6f581f2f91f55a783896edc6dd
# Parent  5b270174611f300d87ecf046b8e842dcdc458e22
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann2 commit 55eb503f50c54695ec36c3d4671c2b3e64d05f40"

diff -r 5b270174611f -r 90a095e18acb humann2_associate.xml
--- a/humann2_associate.xml	Sat Jan 25 23:11:31 2020 +0000
+++ b/humann2_associate.xml	Fri Feb 05 18:19:31 2021 +0000
@@ -1,8 +1,9 @@
-<tool id="humann2_associate" name="Associate" version="@WRAPPER_VERSION@.0">
+<tool id="humann2_associate" name="Associate" version="@WRAPPER_VERSION@.1">
     <description>HUMAnN2 functions with metadata</description>
     <macros>
         <import>humann2_macros.xml</import>
     </macros>
+    <expand macro="stdio"/>
     <expand macro="requirements"/>
     <expand macro="version"/>
     <command detect_errors="exit_code"><![CDATA[
diff -r 5b270174611f -r 90a095e18acb humann2_macros.xml
--- a/humann2_macros.xml	Sat Jan 25 23:11:31 2020 +0000
+++ b/humann2_macros.xml	Fri Feb 05 18:19:31 2021 +0000
@@ -7,6 +7,13 @@
             <yield/>
         </requirements>
     </xml>
+    
+    <xml name="stdio">
+        <stdio>
+            <regex match="Failed to allocate sufficient memory." source="stderr" level="fatal_oom" description="Out of memory error occurred" />
+            <regex match="MemoryError" source="stderr" level="fatal_oom" description="Out of memory error occurred" />
+        </stdio>
+    </xml>
     <xml name="version">
         <version_command>humann2 --version</version_command>
     </xml>
diff -r 5b270174611f -r 90a095e18acb repository_dependencies.xml
--- a/repository_dependencies.xml	Sat Jan 25 23:11:31 2020 +0000
+++ b/repository_dependencies.xml	Fri Feb 05 18:19:31 2021 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0" ?>
 <repositories description="This requires the HUMAnN2 data manager definition to install all required databases.">
-    <repository changeset_revision="db1dd1044a39" name="data_manager_metaphlan2_database_downloader" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="afe83ae43e1e" name="data_manager_humann2_database_downloader" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository name="data_manager_metaphlan2_database_downloader" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="db1dd1044a39"/>
+    <repository name="data_manager_humann2_database_downloader" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="afe83ae43e1e"/>
 </repositories>
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