Mercurial > repos > iuc > hmmer_hmmscan

diff hmmscan.xml @ 9:98f5c06a4231 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 0bccf5220ed6549db7e053f85bbe917326b0a0be"
author iuc
date Wed, 21 Jul 2021 14:00:21 +0000
parents 63f1dd395c05
children d546c74bdf0e
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line diff
--- a/hmmscan.xml	Thu Jan 14 15:35:24 2021 +0000
+++ b/hmmscan.xml	Wed Jul 21 14:00:21 2021 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
-<tool id="hmmer_hmmscan" name="hmmscan" version="@TOOL_VERSION@+galaxy1">
+<tool id="hmmer_hmmscan" name="hmmscan" version="@TOOL_VERSION@+galaxy0">
   <description>search protein sequence(s) against a protein profile database</description>
   <macros>
     <import>macros.xml</import>
@@ -26,7 +26,7 @@
   <inputs>
     <expand macro="input_hmm_choice" />
     <!-- todo use Galaxy features like data libraries/data tables/??? -->
-    <param name="seqfile" type="data" format="fasta" label="Sequence file"/>
+    <param name="seqfile" type="data" format="fasta" label="Sequence file" help="Please note this file should have a length less than 100K."/>
     <expand macro="oformat_with_opts_dom_pfam"/>
     <expand macro="thresholds_xml"/>
     <expand macro="cut"/>
@@ -41,7 +41,7 @@
     <test expect_num_outputs="4">
       <param name="input_hmm_conditional|input_hmm_source" value="history"/>
       <param name="input_hmm_conditional|hmmfile" value="MADE1.hmm"/>
-      <param name="seqfile" value="dna_target.fa"/>
+      <param name="seqfile" value="dna_target2.fa"/>
       <expand macro="oformat_test" />
       <expand macro="seed_test" />
       <output name="output" file="MADE1.out" lines_diff="24">