Mercurial > repos > iuc > hmmer_hmmfetch

comparison test-data/MADE1.hmm @ 2:bbc387f18a71 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
author iuc
date Sat, 25 Jun 2016 15:02:44 -0400
parents 0fa9130897ff
children 53f52ab29fdc
comparison
equal deleted inserted replaced
1:1be1fffde2e1 2:bbc387f18a71
1 HMMER3/f [3.1 | February 2013] 1 HMMER3/f [3.1b2 | February 2015]
2 NAME MADE1 2 NAME MADE1
3 ACC DF0000629.2 3 ACC DF0000629.2
4 DESC MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon 4 DESC MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
5 LENG 80 5 LENG 80
6 MAXL 426 6 MAXL 425
7 ALPH DNA 7 ALPH DNA
8 RF yes 8 RF yes
9 MM no 9 MM no
10 CONS yes 10 CONS yes
11 CS no 11 CS no
12 MAP yes 12 MAP yes
13 DATE Tue Feb 19 20:33:41 2013 13 DATE Sat Jun 25 17:24:24 2016
14 NSEQ 1997 14 NSEQ 1997
15 EFFN 3.911818 15 EFFN 3.911818
16 CKSUM 3015610723 16 CKSUM 3015610723
17 STATS LOCAL MSV -8.5786 0.71858 17 STATS LOCAL MSV -8.5408 0.71858
18 STATS LOCAL VITERBI -9.3632 0.71858 18 STATS LOCAL VITERBI -9.6224 0.71858
19 STATS LOCAL FORWARD -3.4823 0.71858 19 STATS LOCAL FORWARD -3.4150 0.71858
20 HMM A C G T 20 HMM A C G T
21 m->m m->i m->d i->m i->i d->m d->d 21 m->m m->i m->d i->m i->i d->m d->d
22 COMPO 1.24257 1.59430 1.62906 1.16413 22 COMPO 1.24533 1.59094 1.62722 1.16493
23 1.38629 1.38629 1.38629 1.38629 23 1.38629 1.38629 1.38629 1.38629
24 0.03960 3.94183 3.94183 1.46634 0.26236 0.00000 * 24 0.21058 4.11281 1.75146 1.46634 0.26236 0.00000 *
25 1 2.69765 2.44396 2.81521 0.24089 1 t x - - 25 1 2.69765 2.44396 2.81521 0.24089 1 t x - -
26 1.38629 1.38629 1.38629 1.38629 26 1.38629 1.38629 1.38629 1.38629
27 0.03960 3.94183 3.94183 1.46634 0.26236 1.09861 0.40547 27 0.03960 3.94183 3.94183 1.46634 0.26236 1.10301 0.40327
28 2 2.72939 2.37873 2.85832 0.24244 2 t x - - 28 2 2.72939 2.37873 2.85832 0.24244 2 t x - -
29 1.38629 1.38629 1.38629 1.38629 29 1.38629 1.38629 1.38629 1.38629
30 0.03725 4.00179 4.00179 1.46634 0.26236 1.09861 0.40547 30 0.03725 4.00179 4.00179 1.46634 0.26236 1.21367 0.35255
31 3 0.16099 3.16370 2.87328 2.99734 3 a x - - 31 3 0.16099 3.16370 2.87328 2.99734 3 a x - -
32 1.38629 1.38629 1.38629 1.38629 32 1.38629 1.38629 1.38629 1.38629
33 0.03604 4.03416 4.03416 1.46634 0.26236 1.09861 0.40547 33 0.03604 4.03416 4.03416 1.46634 0.26236 1.32877 0.30762
34 4 1.98862 2.42132 0.42649 2.10770 4 g x - - 34 4 1.98862 2.42132 0.42649 2.10770 4 g x - -
35 1.38629 1.38629 1.38629 1.38629 35 1.38629 1.38629 1.38629 1.38629
36 0.03539 4.05203 4.05203 1.46634 0.26236 1.09861 0.40547 36 0.03539 4.05203 4.05203 1.46634 0.26236 1.35213 0.29933
37 5 1.96369 2.69532 0.36534 2.32099 5 g x - - 37 5 1.96369 2.69532 0.36534 2.32099 5 g x - -
38 1.38629 1.38629 1.38629 1.38629 38 1.38629 1.38629 1.38629 1.38629
39 0.03764 4.06427 3.92372 1.46634 0.26236 1.09861 0.40547 39 0.03764 4.06427 3.92372 1.46634 0.26236 1.00259 0.45717
40 6 2.56994 2.11239 2.71946 0.30571 6 t x - - 40 6 2.56994 2.11239 2.71946 0.30571 6 t x - -
41 1.37159 1.41129 1.39124 1.37159 41 1.37159 1.41129 1.39124 1.37159
42 0.03806 3.89715 4.07214 1.50442 0.25122 1.00714 0.45454 42 0.03806 3.89715 4.07214 1.50442 0.25122 1.12269 0.39364
43 7 2.58388 2.10353 2.64646 0.31253 12 t x - - 43 7 2.58388 2.10353 2.64646 0.31253 12 t x - -
44 1.38764 1.38524 1.38764 1.38465 44 1.38764 1.38524 1.38764 1.38465
45 0.03494 4.03864 4.09125 1.40070 0.28293 1.09237 0.40860 45 0.03494 4.03864 4.09125 1.40070 0.28293 1.44046 0.27026
46 8 2.18552 2.70201 0.28821 2.64645 14 g x - - 46 8 2.18552 2.70201 0.28821 2.64645 14 g x - -
47 1.38629 1.38629 1.38629 1.38629 47 1.38629 1.38629 1.38629 1.38629
48 0.03628 4.09157 3.96779 1.46634 0.26236 1.09861 0.40547 48 0.03628 4.09157 3.96779 1.46634 0.26236 1.26997 0.32967
49 9 2.16916 2.82142 0.28427 2.60854 15 g x - - 49 9 2.16916 2.82142 0.28427 2.60854 15 g x - -
50 1.38091 1.39033 1.38365 1.39033 50 1.38091 1.39033 1.38365 1.39033
51 0.03566 4.00237 4.08886 1.38021 0.28972 1.01958 0.44745 51 0.03566 4.00237 4.08886 1.38021 0.28972 1.26961 0.32981
52 10 2.45517 2.15232 2.42886 0.34277 18 t x - - 52 10 2.45517 2.15232 2.42886 0.34277 18 t x - -
53 1.39065 1.39065 1.39065 1.37335 53 1.39065 1.39065 1.39065 1.37335
54 0.03536 4.01212 4.09576 1.39554 0.28462 1.09775 0.40589 54 0.03536 4.01212 4.09576 1.39554 0.28462 1.25024 0.33748
55 11 2.10260 2.95484 0.28160 2.64222 21 g x - - 55 11 2.10260 2.95484 0.28160 2.64222 21 g x - -
56 1.36740 1.40555 1.40555 1.36740 56 1.36740 1.40555 1.40555 1.36740
57 0.03843 3.92069 4.02468 1.44733 0.26814 1.09856 0.40549 57 0.03843 3.92069 4.02468 1.44733 0.26814 1.15789 0.37709
58 12 2.54740 0.30185 2.61355 2.21647 26 c x - - 58 12 2.54740 0.30185 2.61355 2.21647 26 c x - -
59 1.38748 1.38276 1.38748 1.38748 59 1.38748 1.38276 1.38748 1.38748
60 0.03457 4.05446 4.09623 1.40847 0.28040 1.05496 0.42803 60 0.03457 4.05446 4.09623 1.40847 0.28040 1.17686 0.36852
61 13 0.28443 2.72003 2.32214 2.48149 28 a x - - 61 13 0.28443 2.72003 2.32214 2.48149 28 a x - -
62 1.38740 1.38740 1.38298 1.38740 62 1.38740 1.38740 1.38298 1.38740
63 0.03441 4.05976 4.10001 1.41198 0.27926 1.09780 0.40587 63 0.03441 4.05976 4.10001 1.41198 0.27926 0.97690 0.47237
64 14 0.29412 2.55413 2.49679 2.35701 30 a x - - 64 14 0.29412 2.55413 2.49679 2.35701 30 a x - -
65 1.38194 1.39067 1.38194 1.39067 65 1.38194 1.39067 1.38194 1.39067
66 0.03505 4.02482 4.10005 1.39522 0.28473 1.09929 0.40512 66 0.03505 4.02482 4.10005 1.39522 0.28473 1.16906 0.37202
67 15 0.18837 2.99710 2.82270 2.77556 33 a x - - 67 15 0.18837 2.99710 2.82270 2.77556 33 a x - -
68 1.39015 1.39472 1.37503 1.38539 68 1.39015 1.39472 1.37503 1.38539
69 0.03725 3.97815 4.02618 1.37955 0.28994 1.10102 0.40426 69 0.03725 3.97815 4.02618 1.37955 0.28994 1.16870 0.37218
70 16 0.50816 2.05151 2.22111 1.82407 37 a x - - 70 16 0.50816 2.05151 2.22111 1.82407 37 a x - -
71 1.36727 1.38730 1.39683 1.39405 71 1.36727 1.38730 1.39683 1.39405
72 0.04830 3.89881 3.61610 1.29026 0.32186 1.05306 0.42905 72 0.04830 3.89881 3.61610 1.29026 0.32186 1.08301 0.41336
73 17 2.11260 2.73141 0.29747 2.64152 41 g x - - 73 17 2.11260 2.73141 0.29747 2.64152 41 g x - -
74 1.36913 1.40376 1.40376 1.36913 74 1.36913 1.40376 1.40376 1.36913
75 0.03705 3.93681 4.08299 1.44872 0.26771 1.07479 0.41759 75 0.03705 3.93681 4.08299 1.44872 0.26771 1.09472 0.40742
76 18 2.24459 1.90539 2.34054 0.43234 46 t x - - 76 18 2.24459 1.90539 2.34054 0.43234 46 t x - -
77 1.33632 1.42493 1.39937 1.38665 77 1.33632 1.42493 1.39937 1.38665
78 0.04427 3.64574 4.06297 1.70501 0.20061 1.21309 0.35279 78 0.04427 3.64574 4.06297 1.70501 0.20061 1.19872 0.35894
79 19 0.44322 2.17202 2.18055 2.03175 57 a x - - 79 19 0.44322 2.17202 2.18055 2.03175 57 a x - -
80 1.41047 1.41471 1.36338 1.35797 80 1.41047 1.41471 1.36338 1.35797
81 0.03970 3.81957 4.07540 1.65588 0.21186 1.22788 0.34660 81 0.03970 3.81957 4.07540 1.65588 0.21186 1.24390 0.34004
82 20 0.33340 2.42691 2.40824 2.25160 66 a x - - 82 20 0.33340 2.42691 2.40824 2.25160 66 a x - -
83 1.29389 1.44615 1.37917 1.43324 83 1.29389 1.44615 1.37917 1.43324
84 0.04223 3.70146 4.09459 1.55158 0.23815 1.05880 0.42598 84 0.04223 3.70146 4.09459 1.55158 0.23815 1.01872 0.44794
85 21 2.50563 1.98543 2.69601 0.33746 74 t x - - 85 21 2.50563 1.98543 2.69600 0.33746 74 t x - -
86 1.39462 1.39462 1.42862 1.32990 86 1.39462 1.39462 1.42862 1.32990
87 0.04184 3.80216 3.98177 1.80466 0.17976 1.00279 0.45705 87 0.04184 3.80216 3.98177 1.80466 0.17976 1.00279 0.45705
88 22 2.54484 1.97505 2.66483 0.33806 84 t x - - 88 22 2.54484 1.97505 2.66483 0.33806 84 t x - -
89 1.39134 1.39489 1.38662 1.37246 89 1.39134 1.39489 1.38662 1.37246
90 0.03877 3.97504 3.95038 1.37620 0.29107 1.13932 0.38572 90 0.03877 3.97504 3.95038 1.37620 0.29107 1.13932 0.38572
199 59 0.41659 2.44509 1.93972 2.20507 1034 a x - - 199 59 0.41659 2.44509 1.93972 2.20507 1034 a x - -
200 1.38198 1.38198 1.39194 1.38932 200 1.38198 1.38198 1.39194 1.38932
201 0.03641 3.98130 4.06929 1.35873 0.29704 1.31330 0.31325 201 0.03641 3.98130 4.06929 1.35873 0.29704 1.31330 0.31325
202 60 0.41612 2.39160 1.97116 2.21075 1037 a x - - 202 60 0.41612 2.39160 1.97116 2.21075 1037 a x - -
203 1.03649 1.46430 1.57421 1.57557 203 1.03649 1.46430 1.57421 1.57557
204 0.04769 3.52580 4.06641 2.32461 0.10294 0.84329 0.56263 204 0.04787 3.52599 4.05584 2.32461 0.10294 0.84329 0.56263
205 61 2.66264 2.12302 2.82746 0.28581 1056 t x - - 205 61 2.66264 2.12302 2.82746 0.28581 1056 t x - -
206 1.36925 1.39635 1.38930 1.39048 206 1.36925 1.39635 1.38930 1.39048
207 0.04097 3.97400 3.84718 1.39433 0.28502 1.12205 0.39395 207 0.04103 3.97406 3.84419 1.39433 0.28502 1.12555 0.39227
208 62 2.26510 2.13196 2.42551 0.37231 1060 t x - - 208 62 2.26510 2.13196 2.42551 0.37231 1060 t x - -
209 1.37965 1.39147 1.39147 1.38264 209 1.37965 1.39147 1.39147 1.38264
210 0.04082 3.91610 3.90805 1.24613 0.33914 0.95192 0.48776 210 0.04136 3.91664 3.88204 1.24613 0.33914 0.95630 0.48501
211 63 0.41244 2.25761 2.16787 2.12907 1062 a x - - 211 63 0.41244 2.25761 2.16787 2.12907 1062 a x - -
212 1.34515 1.41203 1.41203 1.37753 212 1.34515 1.41203 1.41203 1.37753
213 0.04054 3.77835 4.08203 1.30483 0.31638 1.11819 0.39582 213 0.04086 3.77867 4.06371 1.30483 0.31638 1.13245 0.38897
214 64 2.51464 0.37905 2.62296 1.82008 1068 c x - - 214 64 2.51464 0.37905 2.62296 1.82008 1068 c x - -
215 1.39543 1.38753 1.39233 1.37008 215 1.39543 1.38753 1.39233 1.37008
216 0.03854 3.90584 4.03535 1.36573 0.29463 1.13682 0.38689 216 0.03884 3.90614 4.01884 1.36573 0.29463 1.15716 0.37743
217 65 2.16380 2.11332 2.18714 0.42765 1073 t x - - 217 65 2.16380 2.11332 2.18714 0.42765 1073 t x - -
218 1.38764 1.38471 1.38519 1.38764 218 1.38764 1.38471 1.38519 1.38764
219 0.03575 4.05376 4.03073 1.40080 0.28289 1.03825 0.43707 219 0.03603 4.05405 4.01529 1.40080 0.28289 1.06383 0.42332
220 66 2.79349 2.39141 2.87271 0.23478 1075 t x - - 220 66 2.79349 2.39141 2.87271 0.23478 1075 t x - -
221 1.37227 1.39101 1.39101 1.39101 221 1.37227 1.39101 1.39101 1.39101
222 0.03597 4.01447 4.05827 1.39017 0.28639 1.06429 0.42308 222 0.03884 4.01734 3.90722 1.39017 0.28639 1.09574 0.40690
223 67 2.82488 2.47749 2.93179 0.21887 1078 t x - - 223 67 2.82488 2.47749 2.93179 0.21887 1078 t x - -
224 1.38141 1.39112 1.38915 1.38353 224 1.38141 1.39112 1.38915 1.38353
225 0.03661 3.99477 4.04370 1.35958 0.29675 1.13439 0.38804 225 0.03675 3.99492 4.03549 1.35958 0.29675 1.21867 0.35044
226 68 2.77679 2.30433 2.90694 0.24425 1081 t x - - 226 68 2.77679 2.30433 2.90694 0.24425 1081 t x - -
227 1.37593 1.38989 1.45520 1.32825 227 1.37593 1.38989 1.45520 1.32825
228 0.04447 3.68736 3.99242 1.76176 0.18843 0.98580 0.46703 228 0.04566 3.68855 3.93098 1.76176 0.18843 1.07133 0.41939
229 69 2.47698 3.17398 0.19595 2.95437 1093 g x - - 229 69 2.47698 3.17398 0.19595 2.95437 1093 g x - -
230 1.38264 1.38264 1.39734 1.38264 230 1.38264 1.38264 1.39734 1.38264
231 0.05358 3.96553 3.40487 1.40348 0.28202 1.03112 0.44100 231 0.05482 3.96677 3.36946 1.40348 0.28202 1.13963 0.38557
232 70 2.84327 0.27906 2.97336 2.00890 1097 c x - - 232 70 2.84327 0.27906 2.97336 2.00890 1097 c x - -
233 1.38629 1.38629 1.38629 1.38629 233 1.38629 1.38629 1.38629 1.38629
234 0.03412 4.08811 4.08811 1.46634 0.26236 0.69006 0.69625 234 0.03475 4.08873 4.05197 1.46634 0.26236 0.79234 0.60291
235 71 0.21870 2.83638 2.69251 2.65798 1098 a x - - 235 71 0.21870 2.83638 2.69251 2.65798 1098 a x - -
236 1.37446 1.37942 1.39640 1.39509 236 1.37446 1.37942 1.39640 1.39509
237 0.03670 3.93983 4.09935 1.41905 0.27700 1.10002 0.40476 237 0.04066 3.94379 3.88865 1.41905 0.27700 1.24551 0.33939
238 72 2.35233 0.46085 2.23804 1.78715 1103 c x - - 238 72 2.35233 0.46085 2.23804 1.78715 1103 c x - -
239 1.38536 1.38781 1.38781 1.38421 239 1.38536 1.38781 1.38781 1.38421
240 0.03493 4.03822 4.09272 1.39310 0.28542 1.09638 0.40658 240 0.03885 4.04214 3.88532 1.39310 0.28542 1.30851 0.31501
241 73 2.57111 0.32543 2.74124 1.98892 1105 c x - - 241 73 2.57111 0.32543 2.74124 1.98892 1105 c x - -
242 1.38629 1.38629 1.38629 1.38629 242 1.38629 1.38629 1.38629 1.38629
243 0.03381 4.09688 4.09688 1.46634 0.26236 1.09626 0.40664 243 0.03403 4.09710 4.08422 1.46634 0.26236 1.37004 0.29316
244 74 0.27014 2.61416 2.53262 2.47636 1106 a x - - 244 74 0.27014 2.61416 2.53262 2.47636 1106 a x - -
245 1.38629 1.38629 1.38629 1.38629 245 1.38629 1.38629 1.38629 1.38629
246 0.03461 4.09267 4.05587 1.46634 0.26236 1.09748 0.40603 246 0.03889 4.09695 3.83874 1.46634 0.26236 1.37489 0.29151
247 75 0.52873 2.16549 1.91736 1.90409 1107 a x - - 247 75 0.52873 2.16549 1.91736 1.90409 1107 a x - -
248 1.38629 1.38629 1.38629 1.38629 248 1.38629 1.38629 1.38629 1.38629
249 0.03426 4.08396 4.08396 1.46634 0.26236 1.07423 0.41788 249 0.04237 4.09207 3.69758 1.46634 0.26236 1.41112 0.27954
250 76 2.33134 0.38082 2.65861 1.90055 1108 c x - - 250 76 2.33134 0.38082 2.65861 1.90055 1108 c x - -
251 1.38629 1.38629 1.38629 1.38629 251 1.38629 1.38629 1.38629 1.38629
252 0.03466 4.07266 4.07266 1.46634 0.26236 1.09861 0.40547 252 0.04659 4.08459 3.55121 1.46634 0.26236 1.54765 0.23921
253 77 2.20588 0.45134 2.35553 1.84373 1109 c x - - 253 77 2.20588 0.45134 2.35553 1.84373 1109 c x - -
254 1.38629 1.38629 1.38629 1.38629 254 1.38629 1.38629 1.38629 1.38629
255 0.03550 4.04912 4.04912 1.46634 0.26236 1.09861 0.40547 255 0.05904 4.07266 3.21140 1.46634 0.26236 1.68734 0.20458
256 78 2.69018 2.22054 2.82311 0.26898 1110 t x - - 256 78 2.69018 2.22054 2.82311 0.26898 1110 t x - -
257 1.38629 1.38629 1.38629 1.38629 257 1.38629 1.38629 1.38629 1.38629
258 0.03711 4.00561 4.00561 1.46634 0.26236 1.09861 0.40547 258 0.08061 4.04912 2.81320 1.46634 0.26236 1.91269 0.15980
259 79 0.16248 3.15867 2.86159 2.98963 1111 a x - - 259 79 0.16248 3.15867 2.86159 2.98963 1111 a x - -
260 1.38629 1.38629 1.38629 1.38629 260 1.38629 1.38629 1.38629 1.38629
261 0.04048 3.92018 3.92018 1.46634 0.26236 1.09861 0.40547 261 0.12592 4.00561 2.30158 1.46634 0.26236 2.22059 0.11490
262 80 0.17484 3.04770 2.86638 2.88183 1112 a x - - 262 80 0.17484 3.04770 2.86638 2.88183 1112 a x - -
263 1.38629 1.38629 1.38629 1.38629 263 1.38629 1.38629 1.38629 1.38629
264 0.02045 3.90014 * 1.46634 0.26236 0.00000 * 264 0.02045 3.90014 * 1.46634 0.26236 0.00000 *
265 // 265 //