Mercurial > repos > iuc > hmmer_hmmbuild
diff test-data/MADE1.hmm @ 2:9a0a34e55dee draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
| author | iuc |
|---|---|
| date | Sat, 25 Jun 2016 15:02:07 -0400 |
| parents | 648d9e133324 |
| children | ca0f80060539 |
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--- a/test-data/MADE1.hmm Mon Oct 19 21:10:50 2015 -0400 +++ b/test-data/MADE1.hmm Sat Jun 25 15:02:07 2016 -0400 @@ -1,88 +1,88 @@ -HMMER3/f [3.1 | February 2013] +HMMER3/f [3.1b2 | February 2015] NAME MADE1 ACC DF0000629.2 DESC MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon LENG 80 -MAXL 426 +MAXL 425 ALPH DNA RF yes MM no CONS yes CS no MAP yes -DATE Tue Feb 19 20:33:41 2013 +DATE Sat Jun 25 17:24:24 2016 NSEQ 1997 EFFN 3.911818 CKSUM 3015610723 -STATS LOCAL MSV -8.5786 0.71858 -STATS LOCAL VITERBI -9.3632 0.71858 -STATS LOCAL FORWARD -3.4823 0.71858 +STATS LOCAL MSV -8.5408 0.71858 +STATS LOCAL VITERBI -9.6224 0.71858 +STATS LOCAL FORWARD -3.4150 0.71858 HMM A C G T m->m m->i m->d i->m i->i d->m d->d - COMPO 1.24257 1.59430 1.62906 1.16413 + COMPO 1.24533 1.59094 1.62722 1.16493 1.38629 1.38629 1.38629 1.38629 - 0.03960 3.94183 3.94183 1.46634 0.26236 0.00000 * + 0.21058 4.11281 1.75146 1.46634 0.26236 0.00000 * 1 2.69765 2.44396 2.81521 0.24089 1 t x - - 1.38629 1.38629 1.38629 1.38629 - 0.03960 3.94183 3.94183 1.46634 0.26236 1.09861 0.40547 + 0.03960 3.94183 3.94183 1.46634 0.26236 1.10301 0.40327 2 2.72939 2.37873 2.85832 0.24244 2 t x - - 1.38629 1.38629 1.38629 1.38629 - 0.03725 4.00179 4.00179 1.46634 0.26236 1.09861 0.40547 + 0.03725 4.00179 4.00179 1.46634 0.26236 1.21367 0.35255 3 0.16099 3.16370 2.87328 2.99734 3 a x - - 1.38629 1.38629 1.38629 1.38629 - 0.03604 4.03416 4.03416 1.46634 0.26236 1.09861 0.40547 + 0.03604 4.03416 4.03416 1.46634 0.26236 1.32877 0.30762 4 1.98862 2.42132 0.42649 2.10770 4 g x - - 1.38629 1.38629 1.38629 1.38629 - 0.03539 4.05203 4.05203 1.46634 0.26236 1.09861 0.40547 + 0.03539 4.05203 4.05203 1.46634 0.26236 1.35213 0.29933 5 1.96369 2.69532 0.36534 2.32099 5 g x - - 1.38629 1.38629 1.38629 1.38629 - 0.03764 4.06427 3.92372 1.46634 0.26236 1.09861 0.40547 + 0.03764 4.06427 3.92372 1.46634 0.26236 1.00259 0.45717 6 2.56994 2.11239 2.71946 0.30571 6 t x - - 1.37159 1.41129 1.39124 1.37159 - 0.03806 3.89715 4.07214 1.50442 0.25122 1.00714 0.45454 + 0.03806 3.89715 4.07214 1.50442 0.25122 1.12269 0.39364 7 2.58388 2.10353 2.64646 0.31253 12 t x - - 1.38764 1.38524 1.38764 1.38465 - 0.03494 4.03864 4.09125 1.40070 0.28293 1.09237 0.40860 + 0.03494 4.03864 4.09125 1.40070 0.28293 1.44046 0.27026 8 2.18552 2.70201 0.28821 2.64645 14 g x - - 1.38629 1.38629 1.38629 1.38629 - 0.03628 4.09157 3.96779 1.46634 0.26236 1.09861 0.40547 + 0.03628 4.09157 3.96779 1.46634 0.26236 1.26997 0.32967 9 2.16916 2.82142 0.28427 2.60854 15 g x - - 1.38091 1.39033 1.38365 1.39033 - 0.03566 4.00237 4.08886 1.38021 0.28972 1.01958 0.44745 + 0.03566 4.00237 4.08886 1.38021 0.28972 1.26961 0.32981 10 2.45517 2.15232 2.42886 0.34277 18 t x - - 1.39065 1.39065 1.39065 1.37335 - 0.03536 4.01212 4.09576 1.39554 0.28462 1.09775 0.40589 + 0.03536 4.01212 4.09576 1.39554 0.28462 1.25024 0.33748 11 2.10260 2.95484 0.28160 2.64222 21 g x - - 1.36740 1.40555 1.40555 1.36740 - 0.03843 3.92069 4.02468 1.44733 0.26814 1.09856 0.40549 + 0.03843 3.92069 4.02468 1.44733 0.26814 1.15789 0.37709 12 2.54740 0.30185 2.61355 2.21647 26 c x - - 1.38748 1.38276 1.38748 1.38748 - 0.03457 4.05446 4.09623 1.40847 0.28040 1.05496 0.42803 + 0.03457 4.05446 4.09623 1.40847 0.28040 1.17686 0.36852 13 0.28443 2.72003 2.32214 2.48149 28 a x - - 1.38740 1.38740 1.38298 1.38740 - 0.03441 4.05976 4.10001 1.41198 0.27926 1.09780 0.40587 + 0.03441 4.05976 4.10001 1.41198 0.27926 0.97690 0.47237 14 0.29412 2.55413 2.49679 2.35701 30 a x - - 1.38194 1.39067 1.38194 1.39067 - 0.03505 4.02482 4.10005 1.39522 0.28473 1.09929 0.40512 + 0.03505 4.02482 4.10005 1.39522 0.28473 1.16906 0.37202 15 0.18837 2.99710 2.82270 2.77556 33 a x - - 1.39015 1.39472 1.37503 1.38539 - 0.03725 3.97815 4.02618 1.37955 0.28994 1.10102 0.40426 + 0.03725 3.97815 4.02618 1.37955 0.28994 1.16870 0.37218 16 0.50816 2.05151 2.22111 1.82407 37 a x - - 1.36727 1.38730 1.39683 1.39405 - 0.04830 3.89881 3.61610 1.29026 0.32186 1.05306 0.42905 + 0.04830 3.89881 3.61610 1.29026 0.32186 1.08301 0.41336 17 2.11260 2.73141 0.29747 2.64152 41 g x - - 1.36913 1.40376 1.40376 1.36913 - 0.03705 3.93681 4.08299 1.44872 0.26771 1.07479 0.41759 + 0.03705 3.93681 4.08299 1.44872 0.26771 1.09472 0.40742 18 2.24459 1.90539 2.34054 0.43234 46 t x - - 1.33632 1.42493 1.39937 1.38665 - 0.04427 3.64574 4.06297 1.70501 0.20061 1.21309 0.35279 + 0.04427 3.64574 4.06297 1.70501 0.20061 1.19872 0.35894 19 0.44322 2.17202 2.18055 2.03175 57 a x - - 1.41047 1.41471 1.36338 1.35797 - 0.03970 3.81957 4.07540 1.65588 0.21186 1.22788 0.34660 + 0.03970 3.81957 4.07540 1.65588 0.21186 1.24390 0.34004 20 0.33340 2.42691 2.40824 2.25160 66 a x - - 1.29389 1.44615 1.37917 1.43324 - 0.04223 3.70146 4.09459 1.55158 0.23815 1.05880 0.42598 - 21 2.50563 1.98543 2.69601 0.33746 74 t x - - + 0.04223 3.70146 4.09459 1.55158 0.23815 1.01872 0.44794 + 21 2.50563 1.98543 2.69600 0.33746 74 t x - - 1.39462 1.39462 1.42862 1.32990 0.04184 3.80216 3.98177 1.80466 0.17976 1.00279 0.45705 22 2.54484 1.97505 2.66483 0.33806 84 t x - - @@ -201,64 +201,64 @@ 0.03641 3.98130 4.06929 1.35873 0.29704 1.31330 0.31325 60 0.41612 2.39160 1.97116 2.21075 1037 a x - - 1.03649 1.46430 1.57421 1.57557 - 0.04769 3.52580 4.06641 2.32461 0.10294 0.84329 0.56263 + 0.04787 3.52599 4.05584 2.32461 0.10294 0.84329 0.56263 61 2.66264 2.12302 2.82746 0.28581 1056 t x - - 1.36925 1.39635 1.38930 1.39048 - 0.04097 3.97400 3.84718 1.39433 0.28502 1.12205 0.39395 + 0.04103 3.97406 3.84419 1.39433 0.28502 1.12555 0.39227 62 2.26510 2.13196 2.42551 0.37231 1060 t x - - 1.37965 1.39147 1.39147 1.38264 - 0.04082 3.91610 3.90805 1.24613 0.33914 0.95192 0.48776 + 0.04136 3.91664 3.88204 1.24613 0.33914 0.95630 0.48501 63 0.41244 2.25761 2.16787 2.12907 1062 a x - - 1.34515 1.41203 1.41203 1.37753 - 0.04054 3.77835 4.08203 1.30483 0.31638 1.11819 0.39582 + 0.04086 3.77867 4.06371 1.30483 0.31638 1.13245 0.38897 64 2.51464 0.37905 2.62296 1.82008 1068 c x - - 1.39543 1.38753 1.39233 1.37008 - 0.03854 3.90584 4.03535 1.36573 0.29463 1.13682 0.38689 + 0.03884 3.90614 4.01884 1.36573 0.29463 1.15716 0.37743 65 2.16380 2.11332 2.18714 0.42765 1073 t x - - 1.38764 1.38471 1.38519 1.38764 - 0.03575 4.05376 4.03073 1.40080 0.28289 1.03825 0.43707 + 0.03603 4.05405 4.01529 1.40080 0.28289 1.06383 0.42332 66 2.79349 2.39141 2.87271 0.23478 1075 t x - - 1.37227 1.39101 1.39101 1.39101 - 0.03597 4.01447 4.05827 1.39017 0.28639 1.06429 0.42308 + 0.03884 4.01734 3.90722 1.39017 0.28639 1.09574 0.40690 67 2.82488 2.47749 2.93179 0.21887 1078 t x - - 1.38141 1.39112 1.38915 1.38353 - 0.03661 3.99477 4.04370 1.35958 0.29675 1.13439 0.38804 + 0.03675 3.99492 4.03549 1.35958 0.29675 1.21867 0.35044 68 2.77679 2.30433 2.90694 0.24425 1081 t x - - 1.37593 1.38989 1.45520 1.32825 - 0.04447 3.68736 3.99242 1.76176 0.18843 0.98580 0.46703 + 0.04566 3.68855 3.93098 1.76176 0.18843 1.07133 0.41939 69 2.47698 3.17398 0.19595 2.95437 1093 g x - - 1.38264 1.38264 1.39734 1.38264 - 0.05358 3.96553 3.40487 1.40348 0.28202 1.03112 0.44100 + 0.05482 3.96677 3.36946 1.40348 0.28202 1.13963 0.38557 70 2.84327 0.27906 2.97336 2.00890 1097 c x - - 1.38629 1.38629 1.38629 1.38629 - 0.03412 4.08811 4.08811 1.46634 0.26236 0.69006 0.69625 + 0.03475 4.08873 4.05197 1.46634 0.26236 0.79234 0.60291 71 0.21870 2.83638 2.69251 2.65798 1098 a x - - 1.37446 1.37942 1.39640 1.39509 - 0.03670 3.93983 4.09935 1.41905 0.27700 1.10002 0.40476 + 0.04066 3.94379 3.88865 1.41905 0.27700 1.24551 0.33939 72 2.35233 0.46085 2.23804 1.78715 1103 c x - - 1.38536 1.38781 1.38781 1.38421 - 0.03493 4.03822 4.09272 1.39310 0.28542 1.09638 0.40658 + 0.03885 4.04214 3.88532 1.39310 0.28542 1.30851 0.31501 73 2.57111 0.32543 2.74124 1.98892 1105 c x - - 1.38629 1.38629 1.38629 1.38629 - 0.03381 4.09688 4.09688 1.46634 0.26236 1.09626 0.40664 + 0.03403 4.09710 4.08422 1.46634 0.26236 1.37004 0.29316 74 0.27014 2.61416 2.53262 2.47636 1106 a x - - 1.38629 1.38629 1.38629 1.38629 - 0.03461 4.09267 4.05587 1.46634 0.26236 1.09748 0.40603 + 0.03889 4.09695 3.83874 1.46634 0.26236 1.37489 0.29151 75 0.52873 2.16549 1.91736 1.90409 1107 a x - - 1.38629 1.38629 1.38629 1.38629 - 0.03426 4.08396 4.08396 1.46634 0.26236 1.07423 0.41788 + 0.04237 4.09207 3.69758 1.46634 0.26236 1.41112 0.27954 76 2.33134 0.38082 2.65861 1.90055 1108 c x - - 1.38629 1.38629 1.38629 1.38629 - 0.03466 4.07266 4.07266 1.46634 0.26236 1.09861 0.40547 + 0.04659 4.08459 3.55121 1.46634 0.26236 1.54765 0.23921 77 2.20588 0.45134 2.35553 1.84373 1109 c x - - 1.38629 1.38629 1.38629 1.38629 - 0.03550 4.04912 4.04912 1.46634 0.26236 1.09861 0.40547 + 0.05904 4.07266 3.21140 1.46634 0.26236 1.68734 0.20458 78 2.69018 2.22054 2.82311 0.26898 1110 t x - - 1.38629 1.38629 1.38629 1.38629 - 0.03711 4.00561 4.00561 1.46634 0.26236 1.09861 0.40547 + 0.08061 4.04912 2.81320 1.46634 0.26236 1.91269 0.15980 79 0.16248 3.15867 2.86159 2.98963 1111 a x - - 1.38629 1.38629 1.38629 1.38629 - 0.04048 3.92018 3.92018 1.46634 0.26236 1.09861 0.40547 + 0.12592 4.00561 2.30158 1.46634 0.26236 2.22059 0.11490 80 0.17484 3.04770 2.86638 2.88183 1112 a x - - 1.38629 1.38629 1.38629 1.38629 0.02045 3.90014 * 1.46634 0.26236 0.00000 *