# HG changeset patch
# User iuc
# Date 1452846649 18000
# Node ID 4c445862a87a7b5d11b37f67e009f15038100070
# Parent  34e6e6e3567ee9cf9414675e8a2b1331671f9c28
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/hisat2 commit a2aaa7c9fe7b343f95450ec428250317696a9fb7

diff -r 34e6e6e3567e -r 4c445862a87a hisat2_macros.xml
--- a/hisat2_macros.xml	Wed Oct 14 13:11:01 2015 -0400
+++ b/hisat2_macros.xml	Fri Jan 15 03:30:49 2016 -0500
@@ -56,7 +56,7 @@
             ${input_format.paired.paired_end_options.no_discordant}
         #end if
     </token>
-    <token name="strandedness_parameters">
+    <token name="@strandedness_parameters@">
         #if str($spliced_options.spliced_options_selector) == "advanced":
             #if str($spliced_options.rna_strandness).strip() != '':
                 --rna-strandness $spliced_options.rna_strandness
diff -r 34e6e6e3567e -r 4c445862a87a tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Oct 14 13:11:01 2015 -0400
+++ b/tool_dependencies.xml	Fri Jan 15 03:30:49 2016 -0500
@@ -4,6 +4,6 @@
         <repository changeset_revision="0f7f6f91aaee" name="package_hisat_2_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="samtools" version="1.2">
-        <repository changeset_revision="192f00129358" name="package_samtools_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="5b7172f9b230" name="package_samtools_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>