Mercurial > repos > iuc > heinz
comparison visualization.xml @ 0:a365150d73c0 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit b0b2c64a46bdd9beebdfb7fc5312f75346483763
| author | iuc |
|---|---|
| date | Thu, 02 Aug 2018 11:57:26 -0400 |
| parents | |
| children | bb873b309fce |
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| -1:000000000000 | 0:a365150d73c0 |
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| 1 <tool id="heinz_visualization" name="Visualize" version="0.1.0"> | |
| 2 <description>the optimal scoring subnetwork</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="2.38.0">graphviz</requirement> | |
| 5 <requirement type="package" version="0.4.10">py-graphviz</requirement> | |
| 6 </requirements> | |
| 7 <command detect_errors="aggressive"><![CDATA[ | |
| 8 python '$__tool_directory__/visualization.py' -i '$subnetwork' -o $visualization | |
| 9 ]]></command> | |
| 10 <inputs> | |
| 11 <param type="data" name="subnetwork" format="txt" label="Heinz output file" | |
| 12 help='Output file of the tool "Identify optimal scoring subnetwork"'/> | |
| 13 </inputs> | |
| 14 <outputs> | |
| 15 <data name="visualization" format="pdf" label="${tool.name} on ${on_string}: Heinz visualization" /> | |
| 16 </outputs> | |
| 17 <tests> | |
| 18 <test> | |
| 19 <param name="subnetwork" value="Heinz_output.txt" /> | |
| 20 <output name="visualization" file="heinz_graph.pdf" compare="sim_size" delta="2000" /> | |
| 21 </test> | |
| 22 </tests> | |
| 23 <help><![CDATA[ | |
| 24 This tool provides a simple visualisation of the raw output of the Heinz Galaxy tool | |
| 25 and saves the output as PDF. | |
| 26 | |
| 27 Heinz output file: output file of the tool "Identify optimal scoring subnetwork". | |
| 28 ]]></help> | |
| 29 <citations> | |
| 30 <citation type="doi">10.1093/bioinformatics/btn161</citation> | |
| 31 <citation type="doi">10.1093/bioinformatics/btg148</citation> | |
| 32 </citations> | |
| 33 </tool> |