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view test-data/happy.stats.csv @ 0:37c4cd0fdfc5 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/happy commit 9ae0037c379b589aa8e0f825820bb4a7c969cdb2"
author iuc
date Tue, 25 Jan 2022 11:01:53 +0000
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,type,total.truth,total.query,tp,fp,fn,unk,ambi,recall,recall_lower,recall_upper,recall2,precision,precision_lower,precision_upper,na,ambiguous,fp.region.size,fp.rate,sompyversion,sompycmd
0,indels,1,1,0,1,1,0,0,0.0,0.0,0.975,0.0,0.0,0.0,0.975,0.0,0.0,49950,20.02002002002002,som.py-,/usr/local/bin/som.py test-data/small_NA12878-Freebayes-chr21.vcf test-data/small_NA12878-GATK3-chr21.vcf -r test-data/chr21.fa -o happy
1,SNVs,4,3,0,3,4,0,0,0.0,0.0,0.6023646356164746,0.0,0.0,0.0,0.7075982261787133,0.0,0.0,49950,60.06006006006006,som.py-,/usr/local/bin/som.py test-data/small_NA12878-Freebayes-chr21.vcf test-data/small_NA12878-GATK3-chr21.vcf -r test-data/chr21.fa -o happy
5,records,4,4,0,4,4,0,0,0.0,0.0,0.6023646356164746,0.0,0.0,0.0,0.6023646356164746,0.0,0.0,49950,80.08008008008008,som.py-,/usr/local/bin/som.py test-data/small_NA12878-Freebayes-chr21.vcf test-data/small_NA12878-GATK3-chr21.vcf -r test-data/chr21.fa -o happy