Mercurial > repos > iuc > gtdbtk_classify_wf

diff gtdbtk_classify_wf.xml @ 1:ae36206eeeba draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 1dddd355fe97cb9d6bb37f93b98f3402184b4320
author iuc
date Thu, 16 Feb 2023 23:35:41 +0000
parents 5ec8a11d0fad
children 151e8f99baaa
line wrap: on
line diff
--- a/gtdbtk_classify_wf.xml	Tue Dec 13 09:48:12 2022 +0000
+++ b/gtdbtk_classify_wf.xml	Thu Feb 16 23:35:41 2023 +0000
@@ -27,13 +27,17 @@
 --min_perc_aa $advanced.min_perc_aa
 $advanced.force
 --min_af $advanced.min_af
+
+## Required unless mash_db is available:
+--skip_ani_screen
+
 #if str($advanced.output_process_log) == 'yes':
     && cat output_dir/gtdbtk.warnings.log output_dir/gtdbtk.log > '$process_log'
 #end if
     ]]></command>
     <inputs>
         <param name="input" type="data" format="fasta,fasta.gz" multiple="true" label="Fasta (Genome) files"/>
-        <param name="gtdbtk_db" type="select" label="GTDB-Tk database">
+        <param name="gtdbtk_db" type="select" label="GTDB-Tk database" help="This version of GTDB-Tk required GTDB version R207_v2. Please contact your service administrator if this version is not available to select.">
             <options from_data_table="gtdbtk_database">
                 <validator type="no_options" message="No locally cached GTDB-Tk database is available"/>
             </options>