Mercurial > repos > iuc > gtdbtk_classify_wf

diff gtdbtk_classify_wf.xml @ 7:6553a533473e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 54172b87ffedce4d5a3c73f68f5533541933e178
author iuc
date Tue, 11 Mar 2025 14:54:41 +0000
parents c9fa3445a2c6
children 202432c562b0
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--- a/gtdbtk_classify_wf.xml	Sat Sep 28 16:26:02 2024 +0000
+++ b/gtdbtk_classify_wf.xml	Tue Mar 11 14:54:41 2025 +0000
@@ -15,7 +15,7 @@
 #for $i in $input:
     ## gtdbtk uses the file extension to determine the input format.
     #set ext = "." + $i.ext
-    #set input_identifier = re.sub('[^\s\w\-]', '_', str($i.element_identifier)) + $ext
+    #set input_identifier = re.sub('[^\w\-.]', '_', str($i.element_identifier)) + $ext
     ln -s '${i}' input_dir/'${input_identifier}' &&
 #end for
 export GTDBTK_DATA_PATH=$gtdbtk_db.fields.path &&