Mercurial > repos > iuc > ggplot2_violin

comparison ggplot_violin.xml @ 9:8aafe85a86c7 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ggplot2 commit 6737c924917eea8c009c30d7f9917d5a341b9948
author iuc
date Mon, 30 Sep 2024 15:39:53 +0000
parents c212018cbadd
children a931d304f1b3
comparison
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8:c212018cbadd 9:8aafe85a86c7
1 <tool id="ggplot2_violin" name="Violin plot w ggplot2" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01"> 1 <tool id="ggplot2_violin" name="Violin plot w ggplot2" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01">
2 <expand macro="bio_tools"/>
3 <macros> 2 <macros>
4 <import>macros.xml</import> 3 <import>macros.xml</import>
5 </macros> 4 </macros>
5 <expand macro="bio_tools"/>
6 <expand macro="requirements"> 6 <expand macro="requirements">
7 <requirement type="package" version="1.4.4">r-reshape2</requirement> 7 <requirement type="package" version="1.4.4">r-reshape2</requirement>
8 <requirement type="package" version="2.1.0">r-svglite</requirement> 8 <requirement type="package" version="2.1.0">r-svglite</requirement>
9 </expand> 9 </expand>
10 <command detect_errors="exit_code"><![CDATA[ 10 <command detect_errors="exit_code"><![CDATA[
87 <option value="cyan">Cyan</option> 87 <option value="cyan">Cyan</option>
88 <option value="grey">Grey</option> 88 <option value="grey">Grey</option>
89 <option value="gold">Gold</option> 89 <option value="gold">Gold</option>
90 </param> 90 </param>
91 <expand macro="transform" /> 91 <expand macro="transform" />
92 <conditional name="scaling">
93 <param name="plot_scaling" type="select" label="Axis scaling">
94 <option value="Automatic" selected="true">Automatic axis scaling</option>
95 <option value="Defined">User deined axis scales</option>
96 </param>
97 <when value="Automatic" />
98 <when value="Defined">
99 <param name="yaxismin" type="integer" value="0" label="minimal range of y-axis" />
100 <param name="yaxismax" type="integer" value="3" label="maximal range of y-axis" />
101 </when>
102 </conditional>
103 <expand macro="xy_scaling" /> 92 <expand macro="xy_scaling" />
104 <expand macro="theme" /> 93 <expand macro="theme" />
105 <expand macro="legend" /> 94 <expand macro="legend" />
106 </section> 95 </section>
107 <section name="out" title="Output Options" expanded="true"> 96 <section name="out" title="Output Options" expanded="true">
110 </inputs> 99 </inputs>
111 <outputs> 100 <outputs>
112 <expand macro="additional_output" /> 101 <expand macro="additional_output" />
113 </outputs> 102 </outputs>
114 <tests> 103 <tests>
115 <test> 104 <test expect_num_outputs="2">
116 <param name="input1" value="mtcars.txt" ftype="tabular"/> 105 <param name="input1" value="mtcars.txt" ftype="tabular"/>
117 <param name="additional_output_format" value="pdf" /> 106 <param name="additional_output_format" value="pdf" />
118 <output name="output2" file="ggplot_violin_result1.pdf" compare="sim_size"/> 107 <output name="output2" file="ggplot_violin_result1.pdf" ftype="pdf" compare="sim_size"/>
119 </test> 108 </test>
120 </tests> 109 </tests>
121 <help><![CDATA[ 110 <help><![CDATA[
122 Supply this tool with a text file with headers indicating the various groups to be plotted. This tool will sniff out each column with values that can be plotted and display the distribution of that data group. Note that columns may be excluded from this plot if they contain questionable characters. 111 Supply this tool with a text file with headers indicating the various groups to be plotted. This tool will sniff out each column with values that can be plotted and display the distribution of that data group. Note that columns may be excluded from this plot if they contain questionable characters.
123 ]]></help> 112 ]]></help>