Mercurial > repos > iuc > ggplot2_pca

comparison ggplot2_pca.xml @ 7:219a81364e3e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ggplot2 commit 6737c924917eea8c009c30d7f9917d5a341b9948
author iuc
date Mon, 30 Sep 2024 15:39:59 +0000
parents 6d15608e230a
children e0924137a107
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6:6d15608e230a 7:219a81364e3e
1 <tool id="ggplot2_pca" name="PCA plot w ggplot2" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01"> 1 <tool id="ggplot2_pca" name="PCA plot w ggplot2" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01">
2 <expand macro="bio_tools"/>
3 <macros> 2 <macros>
4 <import>macros.xml</import> 3 <import>macros.xml</import>
5 </macros> 4 </macros>
5 <expand macro="bio_tools"/>
6 <requirements> 6 <requirements>
7 <requirement type="package" version="0.4.14">r-ggfortify</requirement> 7 <requirement type="package" version="0.4.14">r-ggfortify</requirement>
8 <requirement type="package" version="2.1.0">r-svglite</requirement> 8 <requirement type="package" version="2.1.0">r-svglite</requirement>
9 </requirements> 9 </requirements>
10 <command detect_errors="exit_code"><![CDATA[ 10 <command detect_errors="exit_code"><![CDATA[
307 </inputs> 307 </inputs>
308 <outputs> 308 <outputs>
309 <expand macro="additional_output" /> 309 <expand macro="additional_output" />
310 </outputs> 310 </outputs>
311 <tests> 311 <tests>
312 <test> 312 <test expect_num_outputs="2">
313 <param name="input1" value="mtcars.txt" ftype="tabular"/> 313 <param name="input1" value="mtcars.txt" ftype="tabular"/>
314 <conditional name="inputdata"> 314 <conditional name="inputdata">
315 <param name="input_type" value="with_header_rownames"/> 315 <param name="input_type" value="with_header_rownames"/>
316 <param name="header" value="TRUE"/> 316 <param name="header" value="TRUE"/>
317 <param name="row_names_index" value="1"/> 317 <param name="row_names_index" value="1"/>
336 </conditional> 336 </conditional>
337 </repeat> 337 </repeat>
338 <param name="circle" value="convex"/> 338 <param name="circle" value="convex"/>
339 </conditional> 339 </conditional>
340 <param name="additional_output_format" value="pdf"/> 340 <param name="additional_output_format" value="pdf"/>
341 <output name="output2" file="ggplot_pca_result1.pdf" compare="sim_size"/> 341 <output name="output2" file="ggplot_pca_result1.pdf" ftype="pdf" compare="sim_size"/>
342 </test> 342 </test>
343 </tests> 343 </tests>
344 <help><![CDATA[ 344 <help><![CDATA[
345 **What it does** 345 **What it does**
346 346