Mercurial > repos > iuc > ggplot2_heatmap2

comparison heatmap2.xml @ 8:81988aed29bd draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heatmap2 commit 2c9e4e82700be2c9d5c703b385c2528369fb3eeb
author iuc
date Fri, 11 Oct 2024 13:12:27 +0000
parents 76b642b4638c
children ee1c90c1c6cc
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7:76b642b4638c 8:81988aed29bd
1 <tool id="ggplot2_heatmap2" name="heatmap2" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.01"> 1 <tool id="ggplot2_heatmap2" name="heatmap2" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.01">
2 <macros> 2 <macros>
3 <token name="@TOOL_VERSION@">3.1.3</token> 3 <token name="@TOOL_VERSION@">3.2.0</token>
4 <token name="@VERSION_SUFFIX@">0</token> 4 <token name="@VERSION_SUFFIX@">0</token>
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
7 <requirement type="package" version="@TOOL_VERSION@">r-gplots</requirement> 7 <requirement type="package" version="@TOOL_VERSION@">r-gplots</requirement>
8 <requirement type="package" version="1.1_3">r-rcolorbrewer</requirement> 8 <requirement type="package" version="1.1_3">r-rcolorbrewer</requirement>
281 </test> 281 </test>
282 <test> 282 <test>
283 <param name="input1" value="mtcars.txt"/> 283 <param name="input1" value="mtcars.txt"/>
284 <param name="cluster" value="no"/> 284 <param name="cluster" value="no"/>
285 <param name="image_file_format" value="png"/> 285 <param name="image_file_format" value="png"/>
286 <output name="output1" file="result2.png" compare="sim_size"/> 286 <output name="output1" file="result2.png" compare="sim_size" delta="12000" />
287 </test> 287 </test>
288 <test> 288 <test>
289 <param name="input1" value="mtcars.txt"/> 289 <param name="input1" value="mtcars.txt"/>
290 <param name="zscore" value="cols"/> 290 <param name="zscore" value="cols"/>
291 <param name="cluster" value="yes"/> 291 <param name="cluster" value="yes"/>
305 <test> 305 <test>
306 <param name="input1" value="mtcars.txt"/> 306 <param name="input1" value="mtcars.txt"/>
307 <param name="zscore" value="rows"/> 307 <param name="zscore" value="rows"/>
308 <param name="type" value="three"/> 308 <param name="type" value="three"/>
309 <param name="image_file_format" value="png"/> 309 <param name="image_file_format" value="png"/>
310 <output name="output1" file="result4.png" compare="sim_size"/> 310 <output name="output1" file="result4.png" compare="sim_size" delta="12000" />
311 </test> 311 </test>
312 <test> 312 <test>
313 <param name="input1" value="mtcars.txt"/> 313 <param name="input1" value="mtcars.txt"/>
314 <param name="cluster" value="yes"/> 314 <param name="cluster" value="yes"/>
315 <param name="distance" value="pearson_correlation"/> 315 <param name="distance" value="pearson_correlation"/>
316 <param name="scale" value="row"/> 316 <param name="scale" value="row"/>
317 <param name="type" value="three"/> 317 <param name="type" value="three"/>
318 <param name="image_file_format" value="png"/> 318 <param name="image_file_format" value="png"/>
319 <output name="output1" file="result5.png" compare="sim_size"/> 319 <output name="output1" file="result5.png" compare="sim_size" delta="12000" />
320 </test> 320 </test>
321 <test> 321 <test>
322 <param name="input1" value="mtcars.txt"/> 322 <param name="input1" value="mtcars.txt"/>
323 <param name="cluster" value="yes"/> 323 <param name="cluster" value="yes"/>
324 <param name="distance" value="spearmann_correlation"/> 324 <param name="distance" value="spearmann_correlation"/>
325 <param name="scale" value="column"/> 325 <param name="scale" value="column"/>
326 <param name="type" value="three"/> 326 <param name="type" value="three"/>
327 <param name="image_file_format" value="png"/> 327 <param name="image_file_format" value="png"/>
328 <output name="output1" file="result6.png" compare="sim_size"/> 328 <output name="output1" file="result6.png" compare="sim_size" delta="12000" />
329 </test> 329 </test>
330 </tests> 330 </tests>
331 <help><![CDATA[ 331 <help><![CDATA[
332 This tool employs the heatmap.2 function from the R gplots package and will generate a heatmap of your data. If clustering is enabled, the heatmap uses the Euclidean distance method and the Complete hierarchical clustering method by default. 332 This tool employs the heatmap.2 function from the R gplots package and will generate a heatmap of your data. If clustering is enabled, the heatmap uses the Euclidean distance method and the Complete hierarchical clustering method by default.
333 333