Mercurial > repos > iuc > ggplot2_heatmap2

comparison heatmap2.xml @ 2:672eb1c4314c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ggplot2 commit f9fb73a88ab8b52ce11c25a966d4fe99e67c9fbf
author iuc
date Mon, 11 Jun 2018 16:03:13 -0400
parents d76c7d77e629
children f86777d8ba62
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1:d76c7d77e629 2:672eb1c4314c
1 <tool id="ggplot2_heatmap2" name="heatmap2" version="@VERSION@"> 1 <tool id="ggplot2_heatmap2" name="heatmap2" version="@VERSION@+galaxy0">
2 <macros> 2 <macros>
3 <import>macros.xml</import> 3 <import>macros.xml</import>
4 </macros> 4 </macros>
5 <expand macro="requirements"> 5 <requirements>
6 <requirement type="package" version="3.0.1">r-gplots</requirement> 6 <requirement type="package" version="3.0.1">r-gplots</requirement>
7 <requirement type="package" version="1.1_2">r-rcolorbrewer</requirement> 7 <requirement type="package" version="1.1_2">r-rcolorbrewer</requirement>
8 </expand> 8 </requirements>
9 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
10 cat '$script' && 10 cat '$script' &&
11 Rscript '$script' && 11 Rscript '$script' &&
12 mv output_plot.pdf $output1 12 mv output_plot.pdf $output1
13 ]]></command> 13 ]]></command>
121 121
122 Input data should have row labels in the first column and column labels. For example, the row labels (the first column) should represent gene IDs and the column labels should represent sample IDs. 122 Input data should have row labels in the first column and column labels. For example, the row labels (the first column) should represent gene IDs and the column labels should represent sample IDs.
123 123
124 This wrapper employs the heatmap.2 function of R. 124 This wrapper employs the heatmap.2 function of R.
125 ]]></help> 125 ]]></help>
126 <expand macro="citations"/> 126 <citations>
127 </citations>
127 </tool> 128 </tool>