Mercurial > repos > iuc > gffcompare
diff test-data/gffcompare_out3.stats @ 3:84845ad0d35c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
| author | iuc |
|---|---|
| date | Mon, 27 May 2019 13:53:51 -0400 |
| parents | |
| children | 7eeb9fba4858 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gffcompare_out3.stats Mon May 27 13:53:51 2019 -0400 @@ -0,0 +1,30 @@ +# gffcompare v0.10.6 | Command line was: +#gffcompare -r ref_annotation -R -T -e 100 -d 100 -p TCONS gffcompare_in4_gtf +# + +#= Summary for dataset: gffcompare_in4_gtf +# Query mRNAs : 35 in 29 loci (15 multi-exon transcripts) +# (3 multi-transcript loci, ~1.2 transcripts per locus) +# Reference mRNAs : 20 in 7 loci (19 multi-exon) +# Super-loci w/ reference transcripts: 6 +#-----------------| Sensitivity | Precision | + Base level: 72.6 | 60.7 | + Exon level: 80.0 | 55.7 | + Intron level: 81.2 | 64.4 | +Intron chain level: 10.5 | 13.3 | + Transcript level: 10.0 | 5.7 | + Locus level: 28.6 | 6.9 | + + Matching intron chains: 2 + Matching transcripts: 2 + Matching loci: 2 + + Missed exons: 3/85 ( 3.5%) + Novel exons: 46/122 ( 37.7%) + Missed introns: 11/69 ( 15.9%) + Novel introns: 28/87 ( 32.2%) + Missed loci: 0/7 ( 0.0%) + Novel loci: 15/29 ( 51.7%) + + Total union super-loci across all input datasets: 21 +35 out of 35 consensus transcripts written in gffcmp.annotated.gtf (0 discarded as redundant)