Mercurial > repos > iuc > gffcompare
diff test-data/gffcompare_out2.stats @ 2:66f066ca5d60 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit a5352fb7f073b0083b750c5cf7d283ebcc16b30d
| author | iuc |
|---|---|
| date | Tue, 05 Feb 2019 15:51:05 -0500 |
| parents | e52ca9ad69ca |
| children | 84845ad0d35c |
line wrap: on
line diff
--- a/test-data/gffcompare_out2.stats Wed Dec 12 03:18:21 2018 -0500 +++ b/test-data/gffcompare_out2.stats Tue Feb 05 15:51:05 2019 -0500 @@ -1,14 +1,14 @@ -# gffcompare v0.9.8 | Command line was: -#gffcompare -r /tmp/tmp6wAQh6/files/000/dataset_668.dat -R -e 100 -d 100 /tmp/tmp6wAQh6/files/000/dataset_667.dat +# gffcompare v0.10.6 | Command line was: +#gffcompare -r /tmp/tmp7AvPf0/files/000/dataset_13.dat -R -T -e 100 -d 100 -p TCONS gffcompare_in4_gtf # -#= Summary for dataset: /tmp/tmp6wAQh6/files/000/dataset_667.dat +#= Summary for dataset: gffcompare_in4_gtf # Query mRNAs : 35 in 29 loci (15 multi-exon transcripts) # (3 multi-transcript loci, ~1.2 transcripts per locus) # Reference mRNAs : 20 in 7 loci (19 multi-exon) # Super-loci w/ reference transcripts: 6 #-----------------| Sensitivity | Precision | - Base level: 74.7 | 60.7 | + Base level: 72.6 | 60.7 | Exon level: 80.0 | 55.7 | Intron level: 81.2 | 64.4 | Intron chain level: 10.5 | 13.3 | @@ -27,3 +27,4 @@ Novel loci: 15/29 ( 51.7%) Total union super-loci across all input datasets: 21 +35 out of 35 consensus transcripts written in gffcmp.annotated.gtf (0 discarded as redundant)