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comparison test-data/gffcompare_out2.stats @ 0:e52ca9ad69ca draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/gffcompare commit 33ef7ef2f829bf46a6fde7637715d974c17f898a
author iuc
date Fri, 07 Apr 2017 16:01:52 -0400
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children 66f066ca5d60
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-1:000000000000 0:e52ca9ad69ca
1 # gffcompare v0.9.8 | Command line was:
2 #gffcompare -r /tmp/tmp6wAQh6/files/000/dataset_668.dat -R -e 100 -d 100 /tmp/tmp6wAQh6/files/000/dataset_667.dat
3 #
4
5 #= Summary for dataset: /tmp/tmp6wAQh6/files/000/dataset_667.dat
6 # Query mRNAs : 35 in 29 loci (15 multi-exon transcripts)
7 # (3 multi-transcript loci, ~1.2 transcripts per locus)
8 # Reference mRNAs : 20 in 7 loci (19 multi-exon)
9 # Super-loci w/ reference transcripts: 6
10 #-----------------| Sensitivity | Precision |
11 Base level: 74.7 | 60.7 |
12 Exon level: 80.0 | 55.7 |
13 Intron level: 81.2 | 64.4 |
14 Intron chain level: 10.5 | 13.3 |
15 Transcript level: 10.0 | 5.7 |
16 Locus level: 28.6 | 6.9 |
17
18 Matching intron chains: 2
19 Matching transcripts: 2
20 Matching loci: 2
21
22 Missed exons: 3/85 ( 3.5%)
23 Novel exons: 46/122 ( 37.7%)
24 Missed introns: 11/69 ( 15.9%)
25 Novel introns: 28/87 ( 32.2%)
26 Missed loci: 0/7 ( 0.0%)
27 Novel loci: 15/29 ( 51.7%)
28
29 Total union super-loci across all input datasets: 21