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comparison test-data/gffcompare_out1.stats @ 0:e52ca9ad69ca draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/gffcompare commit 33ef7ef2f829bf46a6fde7637715d974c17f898a
author iuc
date Fri, 07 Apr 2017 16:01:52 -0400
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children 66f066ca5d60
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-1:000000000000 0:e52ca9ad69ca
1 # gffcompare v0.9.8 | Command line was:
2 #gffcompare -r /tmp/tmp9HJ0Pt/files/000/dataset_364.dat -R -e 100 -d 100 /tmp/tmp9HJ0Pt/files/000/dataset_362.dat /tmp/tmp9HJ0Pt/files/000/dataset_363.dat
3 #
4
5 #= Summary for dataset: /tmp/tmp9HJ0Pt/files/000/dataset_362.dat
6 # Query mRNAs : 50 in 50 loci (0 multi-exon transcripts)
7 # (0 multi-transcript loci, ~1.0 transcripts per locus)
8 # Reference mRNAs : 1 in 1 loci (1 multi-exon)
9 # Super-loci w/ reference transcripts: 1
10 #-----------------| Sensitivity | Precision |
11 Base level: 2.2 | 2.3 |
12 Exon level: 0.0 | 0.0 |
13 Intron level: 0.0 | -nan |
14 Intron chain level: 0.0 | -nan |
15 Transcript level: 0.0 | 0.0 |
16 Locus level: 0.0 | 0.0 |
17
18 Matching intron chains: 0
19 Matching transcripts: 0
20 Matching loci: 0
21
22 Missed exons: 2/3 ( 66.7%)
23 Novel exons: 49/50 ( 98.0%)
24 Missed introns: 2/2 (100.0%)
25 Missed loci: 0/1 ( 0.0%)
26 Novel loci: 49/50 ( 98.0%)
27
28 #= Summary for dataset: /tmp/tmp9HJ0Pt/files/000/dataset_363.dat
29 # Query mRNAs : 50 in 50 loci (0 multi-exon transcripts)
30 # (0 multi-transcript loci, ~1.0 transcripts per locus)
31 # Reference mRNAs : 0 in 0 loci (0 multi-exon)
32
33 Total union super-loci across all input datasets: 87
34 (0 multi-transcript, ~1.1 transcripts per locus)