Mercurial > repos > iuc > gffcompare

comparison test-data/gffcompare_out1.stats @ 3:84845ad0d35c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
author iuc
date Mon, 27 May 2019 13:53:51 -0400
parents 66f066ca5d60
children 9e282a956012
comparison
equal deleted inserted replaced
2:66f066ca5d60 3:84845ad0d35c
1 # gffcompare v0.10.6 | Command line was: 1 # gffcompare v0.11.2 | Command line was:
2 #gffcompare -r /tmp/tmp7AvPf0/files/000/dataset_3.dat -R -e 100 -d 100 -p TCONS gffcompare_in1_gtf gffcompare_in2_gtf 2 #gffcompare -e 100 -d 100 -p TCONS gffcompare_in1_gtf gffcompare_in2_gtf
3 # 3 #
4 4
5 #= Summary for dataset: gffcompare_in1_gtf 5 #= Summary for dataset: gffcompare_in1_gtf
6 # Query mRNAs : 50 in 50 loci (0 multi-exon transcripts) 6 # Query mRNAs : 5 in 5 loci (0 multi-exon transcripts)
7 # (0 multi-transcript loci, ~1.0 transcripts per locus) 7 # (0 multi-transcript loci, ~1.0 transcripts per locus)
8 # Reference mRNAs : 1 in 1 loci (1 multi-exon)
9 # Super-loci w/ reference transcripts: 1
10 #-----------------| Sensitivity | Precision |
11 Base level: 2.2 | 2.3 |
12 Exon level: 0.0 | 0.0 |
13 Intron level: 0.0 | -nan |
14 Intron chain level: 0.0 | -nan |
15 Transcript level: 0.0 | 0.0 |
16 Locus level: 0.0 | 0.0 |
17
18 Matching intron chains: 0
19 Matching transcripts: 0
20 Matching loci: 0
21
22 Missed exons: 2/3 ( 66.7%)
23 Novel exons: 49/50 ( 98.0%)
24 Missed introns: 2/2 (100.0%)
25 Missed loci: 0/1 ( 0.0%)
26 Novel loci: 49/50 ( 98.0%)
27 8
28 #= Summary for dataset: gffcompare_in2_gtf 9 #= Summary for dataset: gffcompare_in2_gtf
29 # Query mRNAs : 50 in 50 loci (0 multi-exon transcripts) 10 # Query mRNAs : 4 in 4 loci (0 multi-exon transcripts)
30 # (0 multi-transcript loci, ~1.0 transcripts per locus) 11 # (0 multi-transcript loci, ~1.0 transcripts per locus)
31 # Reference mRNAs : 0 in 0 loci (0 multi-exon)
32 12
33 Total union super-loci across all input datasets: 87 13 Total union super-loci across all input datasets: 7
34 (0 multi-transcript, ~1.1 transcripts per locus) 14 (0 multi-transcript, ~1.1 transcripts per locus)
35 100 out of 100 consensus transcripts written in gffcmp.combined.gtf (0 discarded as redundant) 15 8 out of 8 consensus transcripts written in gffcmp.combined.gtf (0 discarded as redundant)