Mercurial > repos > iuc > gff_to_prot

comparison convert_gff.xml @ 4:74e9ab4a4c05 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 73c6b2baf9dda26c6809a4f36582f7cbdb161ea1
author iuc
date Mon, 22 Apr 2019 14:40:05 -0400
parents a6aa24fe733c
children a1b3d615f8bf
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3:a6aa24fe733c 4:74e9ab4a4c05
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="gff_to_prot" name="Convert GFF3" version="1.0.0"> 2 <tool id="gff_to_prot" name="Convert GFF3" version="1.0.0">
3 <description>to prot_table for TRANSIT</description> 3 <description>to prot_table for TRANSIT</description>
4 <macros>
5 <import>macros.xml</import>
6 </macros>
4 <command detect_errors="exit_code">$__tool_directory__/gff_to_prot.py '$input' '$output'</command> 7 <command detect_errors="exit_code">$__tool_directory__/gff_to_prot.py '$input' '$output'</command>
5 <inputs> 8 <inputs>
6 <param name="input" type="data" format="gff3" label="GenBank GFF file" /> 9 <param name="input" type="data" format="gff3" label="GenBank GFF file" />
7 </inputs> 10 </inputs>
8 <outputs> 11 <outputs>
14 <output name="output" file="gff_to_prot-out1.txt" /> 17 <output name="output" file="gff_to_prot-out1.txt" />
15 </test> 18 </test>
16 </tests> 19 </tests>
17 20
18 <help> 21 <help>
22 <![CDATA[
23 .. class:: infomark
19 24
20 25
21 <![CDATA[ 26 **What it does**
22 .. class:: infomark
23 27
28 -------------------
24 29
25 **What it does** 30 Convert Gff3 files coming from Genbank in prot_table file that can be used as an input for TRANSIT tools.
26 31
27 ------------------- 32 ]]></help>
28 33 <expand macro="citations" />
29 Convert Gff3 files coming from Genbank in prot_table file that can be used as an input for TRANSIT tools.
30
31 ]]></help>
32 34
33 </tool> 35 </tool>