# HG changeset patch
# User iuc
# Date 1614791843 0
# Node ID 43f7a0890015f04462b34cb79fdccc1754765bd0
# Parent  bb94cb83d93608b4d59efa43714009af057d12e2
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gfa_to_fa commit 83aed19c6cdf00f3133eb80a69cba0074ca244cc"

diff -r bb94cb83d936 -r 43f7a0890015 gfa_to_fa.xml
--- a/gfa_to_fa.xml	Tue Jan 21 23:55:16 2020 +0000
+++ b/gfa_to_fa.xml	Wed Mar 03 17:17:23 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="gfa_to_fa" name="GFA to FASTA" version="0.1.1">
+<tool id="gfa_to_fa" name="GFA to FASTA" version="0.1.2">
     <description>Convert Graphical Fragment Assembly files to FASTA format </description>
     <command detect_errors="exit_code"><![CDATA[
 cat '$in_gfa' | python '$convert' > '$out_fa'
@@ -9,13 +9,13 @@
 import sys
 for line in sys.stdin:
     if line.startswith("S"):
-        l,h,s,x = line.strip().split()
+        l,h,s = line.strip().split('\t')[:3]
         print(">" + h)
         print(s)
         ]]></configfile>
     </configfiles>
     <inputs>
-        <param name="in_gfa" type="data" format="tabular" label="Input GFA file" />
+        <param name="in_gfa" type="data" format="tabular,gfa1" label="Input GFA file" />
     </inputs>
     <outputs>
         <data name="out_fa" format="fasta" label="${tool.name} on ${on_string}: Fasta file" />