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comparison genetrack.xml @ 5:5aeb86949eae draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/genetrack commit 2772547f531819d3f6d892ed041fa39b82e3550f
author iuc
date Wed, 05 Jul 2017 11:56:37 -0400
parents 57bd605ae56d
children
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4:4644c2eee4e5 5:5aeb86949eae
3 <description>peak predictor</description> 3 <description>peak predictor</description>
4 <macros> 4 <macros>
5 <import>genetrack_macros.xml</import> 5 <import>genetrack_macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements" /> 7 <expand macro="requirements" />
8 <command> 8 <command detect_errors="exit_code"><![CDATA[
9 python $__tool_directory__/genetrack.py 9 python '$__tool_directory__/genetrack.py'
10 --input_format $input_format_cond.input_format 10 --input_format $input_format_cond.input_format
11 #for $i in $input_format_cond.input: 11 #for $i in $input_format_cond.input:
12 --input "${i}" "${i.hid}" 12 --input '${i}' '${i.hid}'
13 #end for 13 #end for
14 --sigma $sigma 14 --sigma $sigma
15 --exclusion $exclusion 15 --exclusion $exclusion
16 --up_width $up_width 16 --up_width $up_width
17 --down_width $down_width 17 --down_width $down_width
18 --filter $filter 18 --filter $filter
19 </command> 19 ]]></command>
20 <inputs> 20 <inputs>
21 <conditional name="input_format_cond"> 21 <conditional name="input_format_cond">
22 <param name="input_format" type="select" label="Format of files for conversion"> 22 <param name="input_format" type="select" label="Format of files for conversion">
23 <option value="scidx" selected="True">ScIdx</option> 23 <option value="scidx" selected="True">ScIdx</option>
24 <option value="gff">Gff</option> 24 <option value="gff">Gff</option>