Mercurial > repos > iuc > gemini_set_somatic

comparison gemini_set_somatic.xml @ 1:eae49d42a4a2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit e4dce25c8dbeffca62c402f74ca733ddc7a6091b
author iuc
date Fri, 07 Dec 2018 12:36:16 -0500
parents 5245c281db29
children bd723bd67a67
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0:5245c281db29 1:eae49d42a4a2
1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0"> 1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
2 <description>Tag somatic mutations in a GEMINI database</description> 2 <description>Tag somatic mutations in a GEMINI database</description>
3 <macros> 3 <macros>
4 <import>gemini_macros.xml</import> 4 <import>gemini_macros.xml</import>
5 <token name="@BINARY@">set_somatic</token> 5 <token name="@BINARY@">set_somatic</token>
6 </macros> 6 </macros>
7 <expand macro="requirements" /> 7 <expand macro="requirements" />
8 <expand macro="stdio" /> 8 <expand macro="stdio" />
9 <expand macro="version_command" /> 9 <expand macro="version_command" />
10 <command> 10 <command>
11 <![CDATA[ 11 <![CDATA[
12 @PROVIDE_ANNO_DATA@
13
12 cp "${ infile }" "${ outfile }" && 14 cp "${ infile }" "${ outfile }" &&
13 15
14 gemini @BINARY@ 16 gemini @BINARY@
15 17
16 #if float($min_depth) >= 0: 18 #if float($min_depth) >= 0: