Mercurial > repos > iuc > gemini_pathways

diff gemini_pathways.xml @ 3:1e10a153192d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit e4dce25c8dbeffca62c402f74ca733ddc7a6091b
author: iuc
date: Fri, 07 Dec 2018 12:38:41 -0500
parents: 71c51883304f
children: 1e736aee3c8c
--- a/gemini_pathways.xml	Tue Feb 16 05:55:52 2016 -0500
+++ b/gemini_pathways.xml	Fri Dec 07 12:38:41 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0">
+<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
     <description>Map genes and variants to KEGG pathways</description>
     <macros>
         <import>gemini_macros.xml</import>
@@ -9,10 +9,9 @@
     <expand macro="version_command" />
     <command>
 <![CDATA[
+        @PROVIDE_ANNO_DATA@
+
         gemini
-            #if $annotation_databases:
-                --annotation-dir "${annotation_databases.fields.path}"
-            #end if
             @BINARY@
             -v $ensembl
             $lof