Mercurial > repos > iuc > gemini_mendel_errors

diff gemini_mendel_errors.xml @ 3:083ddae3ec8b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 283362494058ed64143b1f27afb447b8a1cb4313
author iuc
date Fri, 14 Dec 2018 12:27:11 -0500
parents 58899bab0641
children 0b3171d548a2
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line diff
--- a/gemini_mendel_errors.xml	Sat Dec 08 10:27:29 2018 -0500
+++ b/gemini_mendel_errors.xml	Fri Dec 14 12:27:11 2018 -0500
@@ -60,8 +60,15 @@
     <tests>
         <test>
             <param name="infile" value="gemini_de_novo_input.db" ftype="gemini.sqlite" />
-            <param name="columns" value="gene,ref,alt,impact" />
-            <output name="outfile" file="gemini_mendel_errors_result.tabular" />
+            <conditional name="report">
+                <param name="report_selector" value="column_filter" />
+                <param name="columns" value="gene,ref,alt,impact" />
+            </conditional>
+            <output name="outfile">
+                <assert_contents>
+                    <has_line_matching expression="gene&#009;ref&#009;alt&#009;impact&#009;.*violation.*" />
+                </assert_contents>
+            </output>
         </test>
     </tests>
     <help>