Mercurial > repos > iuc > gemini_load

diff gemini_load.xml @ 2:386b3e7c2f77 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gemini commit 2f3c5976d08f63f05e1d9726343d03a478dc035b-dirty
author iuc
date Tue, 16 Feb 2016 05:54:33 -0500
parents 7f7fbd50e9dc
children 3ac6d0e85e98
line wrap: on
line diff
--- a/gemini_load.xml	Tue Dec 29 11:06:57 2015 -0500
+++ b/gemini_load.xml	Tue Feb 16 05:54:33 2016 -0500
@@ -15,12 +15,12 @@
 
         gemini
             #if $annotation_databases:
-                --annotation-dir ${annotation_databases.fields.path}
+                --annotation-dir "${annotation_databases.fields.path}"
             #end if
             @BINARY@
             -v input.vcf.gz
             #if str( $annotation_type ) != "None":
-                -t $annotation_type
+                -t "$annotation_type"
             #end if
 
             #if $ped:
@@ -33,7 +33,7 @@
             $no_load_genotypes
             $no_genotypes
             $passonly
-            $infostring
+            "$infostring"
             --cores \${GALAXY_SLOTS:-4}
 
             "${ outfile }"