Mercurial > repos > iuc > gemini_load

diff gemini_load.xml @ 4:264f4601dd1d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit e4dce25c8dbeffca62c402f74ca733ddc7a6091b
author iuc
date Fri, 07 Dec 2018 12:51:01 -0500
parents 3ac6d0e85e98
children b382ddaf8445
line wrap: on
line diff
--- a/gemini_load.xml	Thu Feb 18 08:10:09 2016 -0500
+++ b/gemini_load.xml	Fri Dec 07 12:51:01 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0">
+<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
     <description>Loading a VCF file into GEMINI</description>
     <macros>
         <import>gemini_macros.xml</import>
@@ -9,14 +9,13 @@
     <expand macro="version_command" />
     <command>
 <![CDATA[
+        @PROVIDE_ANNO_DATA@
+
         ln -s "${ infile }" input.vcf &&
         bgzip -c input.vcf > input.vcf.gz &&
         tabix -p vcf input.vcf.gz &&
 
         gemini
-            #if $annotation_databases:
-                --annotation-dir "${annotation_databases.fields.path}"
-            #end if
             @BINARY@
             -v input.vcf.gz
             #if str( $annotation_type ) != "None":