Mercurial > repos > iuc > gemini_gene_wise

diff gemini_gene_wise.xml @ 1:39688d137011 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit e4dce25c8dbeffca62c402f74ca733ddc7a6091b
author iuc
date Fri, 07 Dec 2018 12:48:56 -0500
parents ee0f11e786d2
children a13db2025d59
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line diff
--- a/gemini_gene_wise.xml	Tue Feb 16 05:55:08 2016 -0500
+++ b/gemini_gene_wise.xml	Fri Dec 07 12:48:56 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0">
+<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
     <description>Custom genotype filtering by gene</description>
     <macros>
         <import>gemini_macros.xml</import>
@@ -9,6 +9,8 @@
     <expand macro="version_command" />
     <command>
 <![CDATA[
+        @PROVIDE_ANNO_DATA@
+
         gemini @BINARY@
 
             
@@ -16,13 +18,11 @@
                 --min_filters $min_filters
             #end if
 
-            #if $gt_filter.strip():
-                --gt-filter "${gt_filter}"
-            #end if
+            #set $multiline_sql_expr = $gt_filter
+            #set $cmdln_param = "--gt-filter"
+            @MULTILN_SQL_EXPR_TO_CMDLN@
 
-            #if $report.report_selector != 'all':
-                --columns "${report.columns}"
-            #end if
+            @COLUMN_SELECT@
 
             @CMDLN_SQL_FILTER_FILTER_OPTION@