Mercurial > repos > iuc > gemini_comp_hets

diff gemini_comp_hets.xml @ 2:f52ad3dcee4e draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gemini commit 2f3c5976d08f63f05e1d9726343d03a478dc035b-dirty
author iuc
date Tue, 16 Feb 2016 05:52:05 -0500
parents a511fb5bd380
children ac78943ce161
line wrap: on
line diff
--- a/gemini_comp_hets.xml	Tue Dec 29 11:05:46 2015 -0500
+++ b/gemini_comp_hets.xml	Tue Feb 16 05:52:05 2016 -0500
@@ -22,7 +22,7 @@
             #end if
 
             #if str($families).strip():
-                --families $families
+                --families "$families"
             #end if
 
             -d $d
@@ -52,18 +52,11 @@
         <expand macro="family" />
         <expand macro="unaffected" />
         <expand macro="min_sequence_depth" />
-        <param name="min_genotypequality" type="integer" value="0" label="The minimum genotype quality required for each sample in a family." help="default: 0 (--min-gq)">
-            <validator type="in_range" min="0"/>
-        </param>
-        <param name="gt_pl_max" type="integer" value="-1" label="The maximum phred-scaled genotype (PL) allowed for each sample in a family." help="default: -1 not set (--gt-pl-max)">
-            <validator type="in_range" min="-1"/>
-        </param>
+        <param name="min_genotypequality" type="integer" value="0" min="0" label="The minimum genotype quality required for each sample in a family." help="default: 0 (--min-gq)" />
+        <param name="gt_pl_max" type="integer" value="-1" min="-1" label="The maximum phred-scaled genotype (PL) allowed for each sample in a family." help="default: -1 not set (--gt-pl-max)" />
         <param name="pattern_only" type="boolean" truevalue="--pattern-only" falsevalue="" checked="False"
             label="Find compound hets by inheritance pattern, without regard to affection" help="(--pattern-only)"/>
-        <param name="max_priority" type="integer" value="1" label="Default is to show only confident compound hets. Set to 2 or higher to include pairs that are less likely true comp-hets." help="default: 1 (--max-priority)">
-            <validator type="in_range" min="1"/>
-        </param>
-
+        <param name="max_priority" type="integer" value="1" min="1" label="Default is to show only confident compound hets. Set to 2 or higher to include pairs that are less likely true comp-hets." help="default: 1 (--max-priority)" />
     </inputs>
     <outputs>
         <data name="outfile" format="tabular" />