Mercurial > repos > iuc > gemini_comp_hets

comparison gemini_macros.xml @ 2:f52ad3dcee4e draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gemini commit 2f3c5976d08f63f05e1d9726343d03a478dc035b-dirty
author iuc
date Tue, 16 Feb 2016 05:52:05 -0500
parents a511fb5bd380
children ac78943ce161
comparison
equal deleted inserted replaced
1:4c4f5f89cda2 2:f52ad3dcee4e
58 <option value="end">end</option> 58 <option value="end">end</option>
59 <option value="ref">ref</option> 59 <option value="ref">ref</option>
60 <option value="alt">alt</option> 60 <option value="alt">alt</option>
61 <option value="impact">impact</option> 61 <option value="impact">impact</option>
62 <option value="impact_severity">impact_severity</option> 62 <option value="impact_severity">impact_severity</option>
63 <option value="max_aaf_all">alternative allele frequency</option>
63 </param> 64 </param>
64 </when> 65 </when>
65 </conditional> 66 </conditional>
66 </xml> 67 </xml>
67 68
109 <xml name="min_kindreds"> 110 <xml name="min_kindreds">
110 <param name="min_kindreds" type="integer" value="1" label="The min. number of kindreds that must have a candidate variant in a gene" help="default: 1 (--min-kindreds)" /> 111 <param name="min_kindreds" type="integer" value="1" label="The min. number of kindreds that must have a candidate variant in a gene" help="default: 1 (--min-kindreds)" />
111 </xml> 112 </xml>
112 113
113 <xml name="min_sequence_depth"> 114 <xml name="min_sequence_depth">
114 <param name="d" type="integer" value="0" label="The minimum aligned sequence depth (genotype DP) required for each sample" 115 <param name="d" type="integer" value="0" min="0" label="The minimum aligned sequence depth (genotype DP) required for each sample"
115 help="default: 0 (-d)"> 116 help="default: 0 (-d)" />
116 <validator type="in_range" min="0"/>
117 </param>
118 </xml> 117 </xml>
119 118
120 <xml name="min_gq"> 119 <xml name="min_gq">
121 <param name="min_gq" type="integer" value="0" label="the minimum genotype quality required for each sample in a family" help="default: 0 (--min-gq)"> 120 <param name="min_gq" type="integer" value="0" label="the minimum genotype quality required for each sample in a family" help="default: 0 (--min-gq)">
122 <validator type="in_range" min="0"/> 121 <validator type="in_range" min="0"/>
123 </param> 122 </param>
124 </xml> 123 </xml>
125 124
126 <xml name="gt_pl_max"> 125 <xml name="gt_pl_max">
127 <param name="gt_pl_max" type="integer" value="-1" label="The maximum phred-scaled genotype likelihod (PL) allowed for each sample in a family" help="default: -1 (not set) (--gt-pl-max)"> 126 <param name="gt_pl_max" type="integer" value="-1" min="-1" label="The maximum phred-scaled genotype likelihod (PL) allowed for each sample in a family" help="default: -1 (not set) (--gt-pl-max)" />
128 <validator type="in_range" min="-1"/>
129 </param>
130 </xml> 127 </xml>
131 <token name="@VERSION@">0.18.0</token> 128 <token name="@VERSION@">0.18.1</token>
132 129
133 <xml name="citations"> 130 <xml name="citations">
134 <citations> 131 <citations>
135 <citation type="doi">10.1371/journal.pcbi.1003153</citation> 132 <citation type="doi">10.1371/journal.pcbi.1003153</citation>
136 <yield /> 133 <yield />