Mercurial > repos > iuc > gemini_annotate
diff gemini_annotate.xml @ 2:54f607ff195b draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gemini commit 2f3c5976d08f63f05e1d9726343d03a478dc035b-dirty
| author | iuc |
|---|---|
| date | Tue, 16 Feb 2016 05:56:10 -0500 |
| parents | c30f03974122 |
| children | f052e48b4783 |
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--- a/gemini_annotate.xml Tue Dec 29 11:07:40 2015 -0500 +++ b/gemini_annotate.xml Tue Feb 16 05:56:10 2016 -0500 @@ -10,8 +10,8 @@ <command> <![CDATA[ - bgzip -c $annotate_source > tabixed.gz; - tabix -p bed tabixed.gz; + bgzip -c "$annotate_source" > tabixed.gz && + tabix -p bed tabixed.gz && gemini @BINARY@ -f tabixed.gz @@ -65,7 +65,7 @@ <option value="mean">Compute the average of the (numeric) values</option> <option value="sum">Compute the sum of the (numeric) values</option> <option value="median">Compute the median of the (numeric) values</option> - <option value="mix">Compute the minimum of the (numeric) values</option> + <option value="min">Compute the minimum of the (numeric) values</option> <option value="max">Compute the maximum of the (numeric) values</option> <option value="mode">Compute the maximum of the (numeric) values</option> <option value="first">Use the value from the first record in the annotation file</option> @@ -166,7 +166,7 @@ - -o mean Compute the average of the values. They must be numeric. - -o median Compute the median of the values. They must be numeric. - - -o mix Compute the minimum of the values. They must be numeric. + - -o min Compute the minimum of the values. They must be numeric. - -o max Compute the maximum of the values. They must be numeric. - -o mode Compute the maximum of the values. They must be numeric. - -o first Use the value from the first record in the annotation file.