Mercurial > repos > iuc > gemini_annotate

comparison gemini_annotate.xml @ 4:80024600788f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit e8ff2fa7d0fec40e1abbeac15907a5a1d4a20a86
author iuc
date Sat, 08 Dec 2018 10:30:26 -0500
parents f052e48b4783
children 1f5421e565d8
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3:f052e48b4783 4:80024600788f
12 12
13 ## For GEMINI to work correctly, tabixed file must have form [name].[bed|vcf].gz 13 ## For GEMINI to work correctly, tabixed file must have form [name].[bed|vcf].gz
14 #set $tabixed_file = "tabixed.%s.gz" % $annotate_source.ext 14 #set $tabixed_file = "tabixed.%s.gz" % $annotate_source.ext
15 bgzip -c "$annotate_source" > $tabixed_file && 15 bgzip -c "$annotate_source" > $tabixed_file &&
16 tabix -p "$annotate_source.ext" $tabixed_file && 16 tabix -p "$annotate_source.ext" $tabixed_file &&
17
18 @PROVIDE_ANNO_DATA@
19 17
20 gemini @BINARY@ 18 gemini @BINARY@
21 -f $tabixed_file 19 -f $tabixed_file
22 -c $column_name 20 -c $column_name
23 -a $a.a_selector 21 -a $a.a_selector