Mercurial > repos > iuc > gemini
diff gemini_windower.xml @ 20:b5207530f991 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_downloader commit e88029bb12e5262687267293f9d2a694eb00d3f0-dirty
| author | iuc |
|---|---|
| date | Tue, 29 Dec 2015 10:19:47 -0500 |
| parents | 27ce3de83007 |
| children |
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--- a/gemini_windower.xml Fri Oct 16 13:55:09 2015 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,64 +0,0 @@ -<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0"> - <description>Conducting analyses on genome "windows"</description> - <macros> - <import>gemini_macros.xml</import> - <token name="@BINARY@">windower</token> - </macros> - <expand macro="requirements" /> - <expand macro="stdio" /> - <expand macro="version_command" /> - <command> -<![CDATA[ - gemini @BINARY@ - -w $w - -s $s - -t $window_analysis - -o $operation - "${ infile }" - > "${ outfile }" -]]> - </command> - <inputs> - <expand macro="infile" /> - - <param name="window_analysis" type="select" label="The type of window analysis requested?" help="(-t)"> - <option value="nucl_div">(nucl_div)</option> - <option value="hwe">(hwe)</option> - </param> - - <param name="operation" type="select" label="The operation that should be applied to the -t values" help="(-o)"> - <option value="mean">mean</option> - <option value="median">median</option> - <option value="min">min</option> - <option value="max">max</option> - <option value="collapse">collapse</option> - </param> - - <param name="w" type="integer" value="10000" label="The window size in bp" - help="(-w)"> - <validator type="in_range" min="0"/> - </param> - - <param name="s" type="integer" value="1000" label="The step size for the windows in bp" - help="(-s)"> - <validator type="in_range" min="0"/> - </param> - - </inputs> - - <outputs> - <data name="outfile" format="tabular" /> - </outputs> - <tests> - <test> - </test> - </tests> - <help> -**What it does** - -It computs variation metrics across genomic windows (both fixed and sliding). - -@CITATION@ - </help> - <expand macro="citations"/> -</tool>