--- a/gemini_load.xml	Sun Aug 24 17:50:00 2014 -0400
+++ b/gemini_load.xml	Mon Aug 25 03:19:30 2014 -0400
@@ -8,7 +8,9 @@
     </macros>
     <command>
 <![CDATA[
-        gemini @BINARY@
+        gemini 
+            --annotation-dir ${annotation_databases}
+            @BINARY@
             -v "${ infile }"
             -t $annotation_type
 
@@ -36,6 +38,7 @@
             <option value="VEP">VEP annotated VCF file</option>
         </param>
         <param name="ped" type="data" format="tablar" optional="True" label="Sample information file in PED+ format" help="(-p)" />
+        <expand macro="annotation_dir" />
 
         <param name="skip_gerp_bp" type="boolean" truevalue="--skip-gerp-bp" falsevalue="" checked="False" 
             label="Do not load GERP scores at base pair resolution" help="(--skip-gerp-bp)"/>