--- a/gemini_load.xml	Mon Aug 25 16:37:46 2014 -0400
+++ b/gemini_load.xml	Wed Feb 18 11:36:37 2015 -0500
@@ -12,7 +12,9 @@
             --annotation-dir ${annotation_databases.fields.path}
             @BINARY@
             -v "${ infile }"
-            -t $annotation_type
+            #if str( $annotation_type ) != "None":
+                -t $annotation_type
+            #end if
 
             #if $ped:
                 -p $ped
@@ -34,7 +36,8 @@
         <param name="infile" type="data" format="vcf" label="VCF file to be loaded in the GEMINI database" />
 
         <param name="annotation_type" type="select" label="The annotations to be used with the input vcf" help="(-t)">
-            <option value="snpEff">snpEff annotated VCF file</option>
+            <option value="None">None (not recommended)</option>
+            <option value="snpEff" selected="True">snpEff annotated VCF file</option>
             <option value="VEP">VEP annotated VCF file</option>
         </param>
         <param name="ped" type="data" format="tablar" optional="True" label="Sample information file in PED+ format" help="(-p)" />
@@ -60,7 +63,7 @@
 
     </inputs>
     <outputs>
-        <data name="outfile" format="sqlite" label="${tool.name} on ${on_string}" />
+        <data name="outfile" format="gemini.sqlite" />
     </outputs>
     <tests>
         <test>