Mercurial > repos > iuc > gemini
comparison gemini_db_info.xml @ 20:b5207530f991 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_downloader commit e88029bb12e5262687267293f9d2a694eb00d3f0-dirty
| author | iuc |
|---|---|
| date | Tue, 29 Dec 2015 10:19:47 -0500 |
| parents | 27ce3de83007 |
| children |
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| 19:27ce3de83007 | 20:b5207530f991 |
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| 1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0"> | |
| 2 <description>List the gemini database tables and columns</description> | |
| 3 <macros> | |
| 4 <import>gemini_macros.xml</import> | |
| 5 <token name="@BINARY@">db_info</token> | |
| 6 </macros> | |
| 7 <expand macro="requirements" /> | |
| 8 <expand macro="stdio" /> | |
| 9 <expand macro="version_command" /> | |
| 10 <command> | |
| 11 <![CDATA[ | |
| 12 gemini @BINARY@ | |
| 13 "${ infile }" | tr -s ' ' '\t' | |
| 14 > "${ outfile }" | |
| 15 ]]> | |
| 16 </command> | |
| 17 <inputs> | |
| 18 <expand macro="infile" /> | |
| 19 </inputs> | |
| 20 <outputs> | |
| 21 <data name="outfile" format="tabular" /> | |
| 22 </outputs> | |
| 23 <tests> | |
| 24 <test> | |
| 25 </test> | |
| 26 </tests> | |
| 27 <help> | |
| 28 **What it does** | |
| 29 | |
| 30 Because of the sheer number of annotations that are stored in gemini, there are admittedly too many columns to remember by rote. | |
| 31 If you can’t recall the name of particular column, just use the db_info tool. It will report all of the tables and all of the columns / types in each table. | |
| 32 | |
| 33 @CITATION@ | |
| 34 </help> | |
| 35 <expand macro="citations"/> | |
| 36 </tool> |