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comparison gemini_pathways.xml @ 2:e6512af21622 draft

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Uploaded
author iuc
date Sun, 24 Aug 2014 17:49:00 -0400
parents 14caa57eca63
children ca4449689d61
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1:5fec0c2b77c7 2:e6512af21622
17 </command> 17 </command>
18 <expand macro="stdio" /> 18 <expand macro="stdio" />
19 <inputs> 19 <inputs>
20 <param name="infile" type="data" format="sqlite" label="GEMINI database" /> 20 <param name="infile" type="data" format="sqlite" label="GEMINI database" />
21 21
22 <param name="ensemble" type="integer" value="68" size="5" label="Version of ensembl genes to use" 22 <param name="ensembl" type="integer" value="68" size="5" label="Version of ensembl genes to use"
23 help="Supported versions: 66 to 71. use versions that match the VEP/snpEff versions of the annotated vcf for correctness. For e.g VEP v2.6 and snpEff v3.1 use Ensembl 68 version of the genomes. (-v)"> 23 help="Supported versions: 66 to 71. use versions that match the VEP/snpEff versions of the annotated vcf for correctness. For e.g VEP v2.6 and snpEff v3.1 use Ensembl 68 version of the genomes. (-v)">
24 <validator type="in_range" min="66" max="71"/> 24 <validator type="in_range" min="66" max="71"/>
25 </param> 25 </param>
26 26
27 <param name="lof" type="boolean" truevalue="--lof" falsevalue="" checked="False" 27 <param name="lof" type="boolean" truevalue="--lof" falsevalue="" checked="False"