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comparison gemini_interactions.xml @ 2:e6512af21622 draft

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author iuc
date Sun, 24 Aug 2014 17:49:00 -0400
parents 14caa57eca63
children ca4449689d61
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1:5fec0c2b77c7 2:e6512af21622
17 @BINARY@ 17 @BINARY@
18 -g "${gene.gene}" 18 -g "${gene.gene}"
19 #end if 19 #end if
20 20
21 -r "${radius}" 21 -r "${radius}"
22 $var 22 $variant_mode
23 "${ infile }" 23 "${ infile }"
24 > "${ outfile }" 24 > "${ outfile }"
25 ]]> 25 ]]>
26
27 loss-of-function
28
29 </command> 26 </command>
30 <expand macro="stdio" /> 27 <expand macro="stdio" />
31 <inputs> 28 <inputs>
32 <param name="infile" type="data" format="sqlite" label="GEMINI database" /> 29 <param name="infile" type="data" format="sqlite" label="GEMINI database" />
33 30
34 <conditional name="gene"> 31 <conditional name="gene">
35 <param name="gene_selector" type="select" label="Studying ..." help=""> 32 <param name="gene_selector" type="select" label="Studying" help="">
36 <option value="gene">Interesting gene</option> 33 <option value="gene">Interesting gene</option>
37 <option value="lof">All loss-of-function variants</option> 34 <option value="lof">All loss-of-function variants</option>
38 </param> 35 </param>
39 <when value="gene"> 36 <when value="gene">
40 <param name="gene" type="text" label="Specify gene name" help="e.g. PTPN22 (-g)" /> 37 <param name="gene" type="text" label="Specify gene name" help="e.g. PTPN22 (-g)" />
41 </when> 38 </when>
42 <when value="lof"/> 39 <when value="lof"/>