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comparison data_manager/data_manager_gemini_download.xml @ 20:b5207530f991 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_downloader commit e88029bb12e5262687267293f9d2a694eb00d3f0-dirty
author iuc
date Tue, 29 Dec 2015 10:19:47 -0500
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19:27ce3de83007 20:b5207530f991
1 <tool id="data_manager_gemini_download" name="GEMINI Download" version="0.18.1" tool_type="manage_data">
2 <description>Download a new database</description>
3 <requirements>
4 <requirement type="package" version="0.18.1">gemini</requirement>
5 </requirements>
6 <stdio>
7 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" />
8 <exit_code range="1:" level="fatal" description="Error" />
9 </stdio>
10 <command interpreter="python">
11 data_manager_gemini_download.py "$out_file"
12 </command>
13 <inputs>
14 <param name="cadd" type="boolean" truevalue="--extra cadd_score" falsevalue="" checked="True"
15 label="Download CADD scores for GEMINI database annotation" help="(--extra cadd_score)"/>
16 <param name="gerp_bp" type="boolean" truevalue="--extra gerp_bp" falsevalue="" checked="True"
17 label="Download GERP for GEMINI database annotation" help="(--extra gerp_bp)"/>
18 </inputs>
19 <outputs>
20 <data name="out_file" format="data_manager_json" label="${tool.name}"/>
21 </outputs>
22 <tests>
23 </tests>
24 <help>
25
26 This tool downloads the GEMINI databases.
27
28 For details about this tool, please go to http://gemini.readthedocs.org
29
30 </help>
31 <citations>
32 <citation type="doi">10.1371/journal.pcbi.1003153</citation>
33 <yield />
34 </citations>
35 </tool>
36