Mercurial > repos > iuc > gemini

comparison gemini_query.xml @ 18:ce61d4876838 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit e5a5ad091c621348dc6ce2df861475ebc54a380e
author iuc
date Tue, 13 Oct 2015 17:23:05 -0400
parents 65f742e605ec
children
comparison
equal deleted inserted replaced
17:65f742e605ec 18:ce61d4876838
71 label="Perform the sample-filter on a family-wise basis" help="(--family-wise)"/> 71 label="Perform the sample-filter on a family-wise basis" help="(--family-wise)"/>
72 72
73 <expand macro="add_header_column" /> 73 <expand macro="add_header_column" />
74 74
75 <!-- TODO: is there any default values set? --> 75 <!-- TODO: is there any default values set? -->
76 <param name="min_kindreds" size="4" type="integer" value="-1" label="Minimum number of families for a variant passing a family-wise filter to be in" help="-1 means default values (--min-kindreds)" /> 76 <param name="min_kindreds" type="integer" value="-1" label="Minimum number of families for a variant passing a family-wise filter to be in" help="-1 means default values (--min-kindreds)" />
77 77
78 <param name="dgidb" type="boolean" truevalue="--dgidb" falsevalue="" checked="False" 78 <param name="dgidb" type="boolean" truevalue="--dgidb" falsevalue="" checked="False"
79 label="Request drug-gene interaction info from DGIdb" help="(--dgidb)"/> 79 label="Request drug-gene interaction info from DGIdb" help="(--dgidb)"/>
80 80
81 <param name="in" type="select" label="A variant must be in either all, none or any samples passing the sample-query filter" help="(--in)"> 81 <param name="in" type="select" label="A variant must be in either all, none or any samples passing the sample-query filter" help="(--in)">
83 <option value="none">Return a variant if the variant does not appear in any of the matching samples. (none)</option> 83 <option value="none">Return a variant if the variant does not appear in any of the matching samples. (none)</option>
84 <option value="any">Return all of the variant which are in all of the matching samples and not in any of the non-matching samples. (any)</option> 84 <option value="any">Return all of the variant which are in all of the matching samples and not in any of the non-matching samples. (any)</option>
85 <option value="only">Return a variant if the variant is only in the matching samples and not in any of the non-matching samples. (only)</option> 85 <option value="only">Return a variant if the variant is only in the matching samples and not in any of the non-matching samples. (only)</option>
86 </param> 86 </param>
87 87
88 <param name="region" size="30" type="text" value="" label="Restrict query to this region" help="e.g. chr1:10-20 (--region)"/> 88 <param name="region" type="text" value="" label="Restrict query to this region" help="e.g. chr1:10-20 (--region)"/>
89 89
90 90
91 </inputs> 91 </inputs>
92 <outputs> 92 <outputs>
93 <data name="outfile" format="tabular" /> 93 <data name="outfile" format="tabular" />