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comparison gemini_interactions.xml @ 4:ca4449689d61 draft

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author iuc
date Mon, 25 Aug 2014 03:19:30 -0400
parents e6512af21622
children 6ab82d8ca805
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3:2ebcf5c69c5e 4:ca4449689d61
7 <token name="@BINARY@">interactions</token> 7 <token name="@BINARY@">interactions</token>
8 </macros> 8 </macros>
9 <command> 9 <command>
10 <![CDATA[ 10 <![CDATA[
11 gemini 11 gemini
12 --annotation-dir ${annotation_databases}
12 #if $gene.gene_selector == 'lof': 13 #if $gene.gene_selector == 'lof':
13 ## lof interactions is a separate program 14 ## lof interactions is a separate program
14 lof_interactions 15 lof_interactions
15 #else: 16 #else:
16 ## use normal gemini interactions program 17 ## use normal gemini interactions program
36 <when value="gene"> 37 <when value="gene">
37 <param name="gene" type="text" label="Specify gene name" help="e.g. PTPN22 (-g)" /> 38 <param name="gene" type="text" label="Specify gene name" help="e.g. PTPN22 (-g)" />
38 </when> 39 </when>
39 <when value="lof"/> 40 <when value="lof"/>
40 </conditional> 41 </conditional>
42 <expand macro="annotation_dir" />
41 <expand macro="radius" /> 43 <expand macro="radius" />
42 <expand macro="variant_mode" /> 44 <expand macro="variant_mode" />
43 </inputs> 45 </inputs>
44 <outputs> 46 <outputs>
45 <data name="outfile" format="tabular" label="${tool.name} on ${on_string}" /> 47 <data name="outfile" format="tabular" label="${tool.name} on ${on_string}" />