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comparison gemini_load.xml @ 15:9876fc2456ac draft

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author iuc
date Wed, 08 Apr 2015 22:46:08 -0400
parents 4289073a653e
children 65f742e605ec
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14:4289073a653e 15:9876fc2456ac
6 <import>gemini_macros.xml</import> 6 <import>gemini_macros.xml</import>
7 <token name="@BINARY@">load</token> 7 <token name="@BINARY@">load</token>
8 </macros> 8 </macros>
9 <command> 9 <command>
10 <![CDATA[ 10 <![CDATA[
11 ln -s "${ infile }" input.vcf &&
12
11 gemini 13 gemini
12 --annotation-dir ${annotation_databases.fields.path} 14 --annotation-dir ${annotation_databases.fields.path}
13 @BINARY@ 15 @BINARY@
14 -v "${ infile }" 16 -v input.vcf
15 #if str( $annotation_type ) != "None": 17 #if str( $annotation_type ) != "None":
16 -t $annotation_type 18 -t $annotation_type
17 #end if 19 #end if
18 20
19 #if $ped: 21 #if $ped: