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comparison gemini_query.xml @ 8:71dc82354595 draft

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author iuc
date Mon, 25 Aug 2014 08:07:37 -0400
parents e6512af21622
children 53a5647e5271
comparison
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7:4e17a332f0d8 8:71dc82354595
49 stratified by the given sample phenotype column--> 49 stratified by the given sample phenotype column-->
50 <expand macro="stdio" /> 50 <expand macro="stdio" />
51 <inputs> 51 <inputs>
52 <param name="infile" type="data" format="sqlite" label="GEMINI database" /> 52 <param name="infile" type="data" format="sqlite" label="GEMINI database" />
53 53
54 <param name="q" type="text" area="True" size="5x50" label="The query to be issued to the database" help="(-q)"/> 54 <param name="q" type="text" area="True" size="5x50" label="The query to be issued to the database" help="(-q)">
55 <param name="gt_filter" type="text" area="True" size="5x50" label="Restrictions to apply to genotype values" help="(--gt-filer)"/> 55 <expand macro="sanitize_query" />
56 <param name="sample_filter" type="text" area="True" size="5x50" label="SQL filter to use to filter the sample table" help="(--sample-filter)"/> 56 </param>
57 <param name="gt_filter" type="text" area="True" size="5x50" label="Restrictions to apply to genotype values" help="(--gt-filer)">
58 <expand macro="sanitize_query" />
59 </param>
60 <param name="sample_filter" type="text" area="True" size="5x50" label="SQL filter to use to filter the sample table" help="(--sample-filter)">
61 <expand macro="sanitize_query" />
62 </param>
57 63
58 <param name="show_samples" type="boolean" truevalue="--show-samples" falsevalue="" checked="False" 64 <param name="show_samples" type="boolean" truevalue="--show-samples" falsevalue="" checked="False"
59 label="Add a column of all sample names with a variant to each variant" help="(--show-samples)"/> 65 label="Add a column of all sample names with a variant to each variant" help="(--show-samples)"/>
60 66
61 <param name="show_families" type="boolean" truevalue="--show-families" falsevalue="" checked="False" 67 <param name="show_families" type="boolean" truevalue="--show-families" falsevalue="" checked="False"