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comparison gemini_macros.xml @ 8:71dc82354595 draft

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Uploaded
author iuc
date Mon, 25 Aug 2014 08:07:37 -0400
parents 5e0f81024cd4
children fc853d53532c
comparison
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7:4e17a332f0d8 8:71dc82354595
82 <option value="no">No additional constraints</option> 82 <option value="no">No additional constraints</option>
83 <option value="yes">Apply additional constraints</option> 83 <option value="yes">Apply additional constraints</option>
84 </param> 84 </param>
85 <when value="no"/> 85 <when value="no"/>
86 <when value="yes"> 86 <when value="yes">
87 <param name="filter" type="text" label="Contraints in SQL syntax" help="Conditions applied here will become WHERE clauses in the query issued to the GEMINI database. E.g. alt='G' or impact_severity = 'HIGH'. (--filter)" /> 87 <param name="filter" type="text" size="20" label="Contraints in SQL syntax" help="Conditions applied here will become WHERE clauses in the query issued to the GEMINI database. E.g. alt='G' or impact_severity = 'HIGH'. (--filter)">
88 <expand macro="sanitize_query" />
89 </param>
88 </when> 90 </when>
89 </conditional> 91 </conditional>
92 </xml>
93
94 <xml name="sanitize_query">
95 <sanitizer invalid_char="">
96 <valid initial="string.printable">
97 </valid>
98 </sanitizer>
90 </xml> 99 </xml>
91 100
92 <xml name="min_sequence_depth"> 101 <xml name="min_sequence_depth">
93 <param name="d" type="integer" value="0" size="5" label="The minimum aligned sequence depth (genotype DP) required for each sample" 102 <param name="d" type="integer" value="0" size="5" label="The minimum aligned sequence depth (genotype DP) required for each sample"
94 help="default: 0 (-d)"> 103 help="default: 0 (-d)">