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comparison gemini_windower.xml @ 17:65f742e605ec draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 344140b8df53b8b7024618bb04594607a045c03a
author iuc
date Mon, 04 May 2015 22:46:38 -0400
parents 53a5647e5271
children ce61d4876838
comparison
equal deleted inserted replaced
16:ae03de7a9fee 17:65f742e605ec
1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0"> 1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0">
2 <description>Conducting analyses on genome "windows"</description> 2 <description>Conducting analyses on genome "windows"</description>
3 <expand macro="requirements" />
4 <expand macro="version_command" />
5 <macros> 3 <macros>
6 <import>gemini_macros.xml</import> 4 <import>gemini_macros.xml</import>
7 <token name="@BINARY@">windower</token> 5 <token name="@BINARY@">windower</token>
8 </macros> 6 </macros>
7 <expand macro="requirements" />
8 <expand macro="stdio" />
9 <expand macro="version_command" />
9 <command> 10 <command>
10 <![CDATA[ 11 <![CDATA[
11 gemini @BINARY@ 12 gemini @BINARY@
12 -w $w 13 -w $w
13 -s $s 14 -s $s
15 -o $operation 16 -o $operation
16 "${ infile }" 17 "${ infile }"
17 > "${ outfile }" 18 > "${ outfile }"
18 ]]> 19 ]]>
19 </command> 20 </command>
20 <expand macro="stdio" />
21 <inputs> 21 <inputs>
22 <expand macro="infile" /> 22 <expand macro="infile" />
23 23
24 <param name="window_analysis" type="select" label="The type of window analysis requested?" help="(-t)"> 24 <param name="window_analysis" type="select" label="The type of window analysis requested?" help="(-t)">
25 <option value="nucl_div">(nucl_div)</option> 25 <option value="nucl_div">(nucl_div)</option>
32 <option value="min">min</option> 32 <option value="min">min</option>
33 <option value="max">max</option> 33 <option value="max">max</option>
34 <option value="collapse">collapse</option> 34 <option value="collapse">collapse</option>
35 </param> 35 </param>
36 36
37 <param name="w" type="integer" value="10000" size="10" label="The window size in bp" 37 <param name="w" type="integer" value="10000" size="10" label="The window size in bp"
38 help="(-w)"> 38 help="(-w)">
39 <validator type="in_range" min="0"/> 39 <validator type="in_range" min="0"/>
40 </param> 40 </param>
41 41
42 <param name="s" type="integer" value="1000" size="10" label="The step size for the windows in bp" 42 <param name="s" type="integer" value="1000" size="10" label="The step size for the windows in bp"
43 help="(-s)"> 43 help="(-s)">
44 <validator type="in_range" min="0"/> 44 <validator type="in_range" min="0"/>
45 </param> 45 </param>
46 46
47 </inputs> 47 </inputs>