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comparison gemini_stats.xml @ 17:65f742e605ec draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 344140b8df53b8b7024618bb04594607a045c03a
author iuc
date Mon, 04 May 2015 22:46:38 -0400
parents 53a5647e5271
children
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16:ae03de7a9fee 17:65f742e605ec
1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0"> 1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0">
2 <description>Compute useful variant statistics</description> 2 <description>Compute useful variant statistics</description>
3 <expand macro="requirements" />
4 <expand macro="version_command" />
5 <macros> 3 <macros>
6 <import>gemini_macros.xml</import> 4 <import>gemini_macros.xml</import>
7 <token name="@BINARY@">stats</token> 5 <token name="@BINARY@">stats</token>
8 </macros> 6 </macros>
7 <expand macro="requirements" />
8 <expand macro="stdio" />
9 <expand macro="version_command" />
9 <command> 10 <command>
10 <![CDATA[ 11 <![CDATA[
11 gemini @BINARY@ 12 gemini @BINARY@
12 $stats_type 13 $stats_type
13 "${ infile }" 14 "${ infile }"
14 > "${ outfile }" 15 > "${ outfile }"
15 ]]> 16 ]]>
16 </command> 17 </command>
17 <expand macro="stdio" />
18 <inputs> 18 <inputs>
19 <expand macro="infile" /> 19 <expand macro="infile" />
20 20
21 <param name="stats_type" type="select" label="Studying ..." help=""> 21 <param name="stats_type" type="select" label="Studying ..." help="">
22 <option value="--tstv">Compute the transition and transversion ratios for the snps (--tstv)</option> 22 <option value="--tstv">Compute the transition and transversion ratios for the snps (--tstv)</option>