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comparison gemini_stats.xml @ 11:53a5647e5271 draft

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author iuc
date Wed, 18 Feb 2015 11:36:37 -0500
parents 14caa57eca63
children 65f742e605ec
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10:0f1bcedd836f 11:53a5647e5271
14 > "${ outfile }" 14 > "${ outfile }"
15 ]]> 15 ]]>
16 </command> 16 </command>
17 <expand macro="stdio" /> 17 <expand macro="stdio" />
18 <inputs> 18 <inputs>
19 <param name="infile" type="data" format="sqlite" label="GEMINI database" /> 19 <expand macro="infile" />
20 20
21 <param name="stats_type" type="select" label="Studying ..." help=""> 21 <param name="stats_type" type="select" label="Studying ..." help="">
22 <option value="--tstv">Compute the transition and transversion ratios for the snps (--tstv)</option> 22 <option value="--tstv">Compute the transition and transversion ratios for the snps (--tstv)</option>
23 <option value="--tstv-coding">Compute the transition/transversion ratios for the snps in the coding regions (--tstv-coding)</option> 23 <option value="--tstv-coding">Compute the transition/transversion ratios for the snps in the coding regions (--tstv-coding)</option>
24 <option value="--tstv-noncoding">Compute the transition/transversion ratios for the snps in the non-coding regions (--tstv-noncoding)</option> 24 <option value="--tstv-noncoding">Compute the transition/transversion ratios for the snps in the non-coding regions (--tstv-noncoding)</option>
28 <option value="--vars_by_sample">Return the total variants per sample, sum of homozygous and heterozygous variants (--vars-by-sample)</option> 28 <option value="--vars_by_sample">Return the total variants per sample, sum of homozygous and heterozygous variants (--vars-by-sample)</option>
29 </param> 29 </param>
30 30
31 </inputs> 31 </inputs>
32 <outputs> 32 <outputs>
33 <data name="outfile" format="tabular" label="${tool.name} on ${on_string}" /> 33 <data name="outfile" format="tabular" />
34 </outputs> 34 </outputs>
35 <tests> 35 <tests>
36 <test> 36 <test>
37 </test> 37 </test>
38 </tests> 38 </tests>