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comparison gemini_load.xml @ 14:4289073a653e draft

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Uploaded
author iuc
date Thu, 19 Mar 2015 22:41:28 -0400
parents 53a5647e5271
children 9876fc2456ac
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13:1386d24ee07e 14:4289073a653e
31 "${ outfile }" 31 "${ outfile }"
32 ]]> 32 ]]>
33 </command> 33 </command>
34 <expand macro="stdio" /> 34 <expand macro="stdio" />
35 <inputs> 35 <inputs>
36 <param name="infile" type="data" format="vcf" label="VCF file to be loaded in the GEMINI database" /> 36 <param name="infile" type="data" format="vcf" label="VCF file to be loaded in the GEMINI database" help="Only build 37 (aka hg19) of the human genome is supported.">
37 <options>
38 <filter type="add_value" value="hg19" />
39 <filter type="add_value" value="Homo_sapiens_nuHg19_mtrCRS" />
40 <filter type="add_value" value="hg_g1k_v37" />
41 </options>
42 </param>
37 43
38 <param name="annotation_type" type="select" label="The annotations to be used with the input vcf" help="(-t)"> 44 <param name="annotation_type" type="select" label="The annotations to be used with the input vcf" help="(-t)">
39 <option value="None">None (not recommended)</option> 45 <option value="None">None (not recommended)</option>
40 <option value="snpEff" selected="True">snpEff annotated VCF file</option> 46 <option value="snpEff" selected="True">snpEff annotated VCF file</option>
41 <option value="VEP">VEP annotated VCF file</option> 47 <option value="VEP">VEP annotated VCF file</option>