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planemo upload for repository https://github.com/fabio-cumbo/GDCWebApp4Galaxy commit 862945f23f52a425b09b1631bd1cde8d22abca03
author iuc
date Mon, 06 Nov 2017 03:04:43 -0500
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-1:000000000000 0:c1c411c2ac95
1 <?xml version="1.0"?>
2 <tool name="GDCWebApp" id="data_source_gdcwebapp" tool_type="data_source_async" hidden="False" display_interface="False" version="1.0.0" force_history_refresh="True" profile="17.09">
3 <description>an intuitive interface to filter, extract, and convert Genomic Data Commons experiments</description>
4 <requirements>
5 <requirement type="package" version="2.7.10">python</requirement>
6 <requirement type="package" version="1.0.1">json_collect_data_source</requirement>
7 </requirements>
8 <command detect_errors="exit_code">json_collect_data_source.py '${__app__.config.output_size_limit}' --json_param_file '${output1}' --path '.' --appdata 'tmp'</command>
9 <inputs check_values="False" action="http://bioinf.iasi.cnr.it/gdcwebapp/app.php">
10 <display>Go to GDCWebApp service $GALAXY_URL</display>
11 <param name="GALAXY_URL" type="baseurl" value="/async/data_source_gdcwebapp" />
12 </inputs>
13 <outputs>
14 <collection name="list_output" type="list:list" label="${tool.name} Output Collection">
15 <discover_datasets pattern="(?P&lt;identifier_0&gt;[^_]+)_(?P&lt;identifier_1&gt;[^_]+)_(?P&lt;ext&gt;[^_]+)_(?P&lt;dbkey&gt;[^_]+)" ext="auto" visible="False" directory="tmp" />
16 </collection>
17 <data name="output1" format="auto" label="${tool.name} Output Data" />
18 </outputs>
19 <options sanitize="False" refresh="True" />
20 </tool>