Mercurial > repos > iuc > gatk4_mutect2
diff test-data/Mutect2-out2.vcf @ 8:55e8a08e39e1 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/gatk4 commit 30797e29f13902f17652cf35585e52b363c28a31
| author | iuc |
|---|---|
| date | Tue, 03 Feb 2026 18:50:29 +0000 |
| parents | d2c0c2698f58 |
| children |
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--- a/test-data/Mutect2-out2.vcf Wed Aug 24 17:58:18 2022 +0000 +++ b/test-data/Mutect2-out2.vcf Tue Feb 03 18:50:29 2026 +0000 @@ -4,6 +4,7 @@ ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)"> ##FORMAT=<ID=F1R2,Number=R,Type=Integer,Description="Count of reads in F1R2 pair orientation supporting each allele"> ##FORMAT=<ID=F2R1,Number=R,Type=Integer,Description="Count of reads in F2R1 pair orientation supporting each allele"> +##FORMAT=<ID=FAD,Number=R,Type=Integer,Description="Count of fragments supporting each allele."> ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> ##FORMAT=<ID=PGT,Number=1,Type=String,Description="Physical phasing haplotype information, describing how the alternate alleles are phased in relation to one another; will always be heterozygous and is not intended to describe called alleles"> @@ -11,18 +12,19 @@ ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification"> ##FORMAT=<ID=PS,Number=1,Type=Integer,Description="Phasing set (typically the position of the first variant in the set)"> ##FORMAT=<ID=SB,Number=4,Type=Integer,Description="Per-sample component statistics which comprise the Fisher's Exact Test to detect strand bias."> -##GATKCommandLine=<ID=Mutect2,CommandLine="Mutect2 --tumor-sample SRR8525881 --output output.vcf --input tumor.bam --reference reference.fa --QUIET true --f1r2-median-mq 50 --f1r2-min-bq 20 --f1r2-max-depth 200 --genotype-pon-sites false --genotype-germline-sites false --af-of-alleles-not-in-resource -1.0 --mitochondria-mode false --tumor-lod-to-emit 3.0 --initial-tumor-lod 2.0 --pcr-snv-qual 40 --pcr-indel-qual 40 --max-population-af 0.01 --downsampling-stride 1 --callable-depth 10 --max-suspicious-reads-per-alignment-start 0 --normal-lod 2.2 --ignore-itr-artifacts false --gvcf-lod-band -2.5 --gvcf-lod-band -2.0 --gvcf-lod-band -1.5 --gvcf-lod-band -1.0 --gvcf-lod-band -0.5 --gvcf-lod-band 0.0 --gvcf-lod-band 0.5 --gvcf-lod-band 1.0 --minimum-allele-fraction 0.0 --independent-mates false --disable-adaptive-pruning false --kmer-size 10 --kmer-size 25 --dont-increase-kmer-sizes-for-cycles false --allow-non-unique-kmers-in-ref false --num-pruning-samples 1 --min-dangling-branch-length 4 --recover-all-dangling-branches false --max-num-haplotypes-in-population 128 --min-pruning 2 --adaptive-pruning-initial-error-rate 0.001 --pruning-lod-threshold 2.302585092994046 --max-unpruned-variants 100 --linked-de-bruijn-graph false --disable-artificial-haplotype-recovery false --debug-assembly false --debug-graph-transformations false --capture-assembly-failure-bam false --error-correction-log-odds -Infinity --error-correct-reads false --kmer-length-for-read-error-correction 25 --min-observations-for-kmer-to-be-solid 20 --base-quality-score-threshold 18 --pair-hmm-gap-continuation-penalty 10 --pair-hmm-implementation FASTEST_AVAILABLE --pcr-indel-model CONSERVATIVE --phred-scaled-global-read-mismapping-rate 45 --native-pair-hmm-threads 4 --native-pair-hmm-use-double-precision false --bam-writer-type CALLED_HAPLOTYPES --dont-use-soft-clipped-bases false --min-base-quality-score 10 --smith-waterman JAVA --emit-ref-confidence NONE --max-mnp-distance 1 --force-call-filtered-alleles false --allele-informative-reads-overlap-margin 2 --min-assembly-region-size 50 --max-assembly-region-size 300 --active-probability-threshold 0.002 --max-prob-propagation-distance 50 --force-active false --assembly-region-padding 100 --padding-around-indels 75 --padding-around-snps 20 --padding-around-strs 75 --max-reads-per-alignment-start 50 --interval-set-rule UNION --interval-padding 0 --interval-exclusion-padding 0 --interval-merging-rule ALL --read-validation-stringency SILENT --seconds-between-progress-updates 10.0 --disable-sequence-dictionary-validation false --create-output-bam-index true --create-output-bam-md5 false --create-output-variant-index true --create-output-variant-md5 false --lenient false --add-output-sam-program-record true --add-output-vcf-command-line true --cloud-prefetch-buffer 40 --cloud-index-prefetch-buffer -1 --disable-bam-index-caching false --sites-only-vcf-output false --help false --version false --showHidden false --verbosity INFO --use-jdk-deflater false --use-jdk-inflater false --gcs-max-retries 20 --gcs-project-for-requester-pays --disable-tool-default-read-filters false --max-read-length 2147483647 --min-read-length 30 --minimum-mapping-quality 20 --disable-tool-default-annotations false --enable-all-annotations false",Version="4.1.7.0",Date="May 8, 2020 3:31:33 PM CEST"> +##GATKCommandLine=<ID=Mutect2,CommandLine="Mutect2 --tumor-sample SRR8525881 --output output.vcf --input tumor.bam --reference reference.fa --QUIET true --f1r2-median-mq 50 --f1r2-min-bq 20 --f1r2-max-depth 200 --flow-likelihood-parallel-threads 0 --flow-likelihood-optimized-comp false --trim-to-haplotype true --exact-matching false --flow-use-t0-tag false --flow-remove-non-single-base-pair-indels false --flow-remove-one-zero-probs false --flow-quantization-bins 121 --flow-fill-empty-bins-value 0.001 --flow-symmetric-indel-probs false --flow-report-insertion-or-deletion false --flow-disallow-probs-larger-than-call false --flow-lump-probs false --flow-retain-max-n-probs-base-format false --flow-probability-scaling-factor 10 --flow-order-cycle-length 4 --keep-boundary-flows false --genotype-pon-sites false --genotype-germline-sites false --genotype-germline-sites-fraction 1.0 --af-of-alleles-not-in-resource -1.0 --mitochondria-mode false --permutect-ref-downsample 10 --permutect-alt-downsample 20 --permutect-non-artifact-ratio 1 --permutect-dataset-mode ILLUMINA --tumor-lod-to-emit 3.0 --initial-tumor-lod 2.0 --pcr-snv-qual 40 --pcr-indel-qual 40 --base-qual-correction-factor 5 --max-population-af 0.01 --downsampling-stride 1 --callable-depth 10 --max-suspicious-reads-per-alignment-start 0 --normal-lod 2.2 --ignore-itr-artifacts false --gvcf-lod-band -2.5 --gvcf-lod-band -2.0 --gvcf-lod-band -1.5 --gvcf-lod-band -1.0 --gvcf-lod-band -0.5 --gvcf-lod-band 0.0 --gvcf-lod-band 0.5 --gvcf-lod-band 1.0 --minimum-allele-fraction 0.0 --independent-mates false --flow-mode NONE --disable-adaptive-pruning false --kmer-size 10 --kmer-size 25 --dont-increase-kmer-sizes-for-cycles false --allow-non-unique-kmers-in-ref false --num-pruning-samples 1 --min-dangling-branch-length 4 --recover-all-dangling-branches false --max-num-haplotypes-in-population 128 --min-pruning 2 --adaptive-pruning-initial-error-rate 0.001 --pruning-lod-threshold 2.302585092994046 --pruning-seeding-lod-threshold 9.210340371976184 --max-unpruned-variants 100 --linked-de-bruijn-graph false --disable-artificial-haplotype-recovery false --enable-legacy-graph-cycle-detection false --debug-assembly false --debug-graph-transformations false --capture-assembly-failure-bam false --num-matching-bases-in-dangling-end-to-recover -1 --error-correction-log-odds -Infinity --error-correct-reads false --kmer-length-for-read-error-correction 25 --min-observations-for-kmer-to-be-solid 20 --likelihood-calculation-engine PairHMM --base-quality-score-threshold 18 --dragstr-het-hom-ratio 2 --dont-use-dragstr-pair-hmm-scores false --pair-hmm-gap-continuation-penalty 10 --expected-mismatch-rate-for-read-disqualification 0.02 --pair-hmm-implementation FASTEST_AVAILABLE --pcr-indel-model CONSERVATIVE --phred-scaled-global-read-mismapping-rate 45 --disable-symmetric-hmm-normalizing false --disable-cap-base-qualities-to-map-quality false --enable-dynamic-read-disqualification-for-genotyping false --dynamic-read-disqualification-threshold 1.0 --native-pair-hmm-threads 4 --native-pair-hmm-use-double-precision false --flow-hmm-engine-min-indel-adjust 6 --flow-hmm-engine-flat-insertion-penatly 45 --flow-hmm-engine-flat-deletion-penatly 45 --pileup-detection false --use-pdhmm false --use-pdhmm-overlap-optimization false --make-determined-haps-from-pd-code false --print-pileupcalling-status false --fallback-gga-if-pdhmm-fails true --pileup-detection-enable-indel-pileup-calling false --pileup-detection-active-region-phred-threshold 0.0 --num-artificial-haplotypes-to-add-per-allele 5 --artifical-haplotype-filtering-kmer-size 10 --pileup-detection-snp-alt-threshold 0.1 --pileup-detection-indel-alt-threshold 0.1 --pileup-detection-absolute-alt-depth 0.0 --pileup-detection-snp-adjacent-to-assembled-indel-range 5 --pileup-detection-snp-basequality-filter 12 --pileup-detection-bad-read-tolerance 0.0 --pileup-detection-proper-pair-read-badness true --pileup-detection-edit-distance-read-badness-threshold 0.08 --pileup-detection-chimeric-read-badness true --pileup-detection-template-mean-badness-threshold 0.0 --pileup-detection-template-std-badness-threshold 0.0 --pileup-detection-filter-assembly-alt-bad-read-tolerance 0.0 --pileup-detection-edit-distance-read-badness-for-assembly-filtering-threshold 0.12 --bam-writer-type CALLED_HAPLOTYPES --dont-use-soft-clipped-bases false --override-fragment-softclip-check false --min-base-quality-score 10 --smith-waterman FASTEST_AVAILABLE --emit-ref-confidence NONE --max-mnp-distance 1 --force-call-filtered-alleles false --reference-model-deletion-quality 30 --soft-clip-low-quality-ends false --allele-informative-reads-overlap-margin 2 --smith-waterman-dangling-end-match-value 25 --smith-waterman-dangling-end-mismatch-penalty -50 --smith-waterman-dangling-end-gap-open-penalty -110 --smith-waterman-dangling-end-gap-extend-penalty -6 --smith-waterman-haplotype-to-reference-match-value 200 --smith-waterman-haplotype-to-reference-mismatch-penalty -150 --smith-waterman-haplotype-to-reference-gap-open-penalty -260 --smith-waterman-haplotype-to-reference-gap-extend-penalty -11 --smith-waterman-read-to-haplotype-match-value 10 --smith-waterman-read-to-haplotype-mismatch-penalty -15 --smith-waterman-read-to-haplotype-gap-open-penalty -30 --smith-waterman-read-to-haplotype-gap-extend-penalty -5 --flow-assembly-collapse-hmer-size 0 --flow-assembly-collapse-partial-mode false --flow-filter-alleles false --flow-filter-alleles-qual-threshold 30.0 --flow-filter-alleles-sor-threshold 3.0 --flow-filter-lone-alleles false --flow-filter-alleles-debug-graphs false --min-assembly-region-size 50 --max-assembly-region-size 300 --active-probability-threshold 0.002 --max-prob-propagation-distance 50 --force-active false --assembly-region-padding 100 --padding-around-indels 75 --padding-around-snps 20 --padding-around-strs 75 --max-extension-into-assembly-region-padding-legacy 25 --max-reads-per-alignment-start 50 --enable-legacy-assembly-region-trimming false --interval-set-rule UNION --interval-padding 0 --interval-exclusion-padding 0 --interval-merging-rule ALL --read-validation-stringency SILENT --seconds-between-progress-updates 10.0 --disable-sequence-dictionary-validation false --create-output-bam-index true --create-output-bam-md5 false --create-output-variant-index true --create-output-variant-md5 false --max-variants-per-shard 0 --lenient false --add-output-sam-program-record true --add-output-vcf-command-line true --cloud-prefetch-buffer 40 --cloud-index-prefetch-buffer -1 --disable-bam-index-caching false --sites-only-vcf-output false --help false --version false --showHidden false --verbosity INFO --use-jdk-deflater false --use-jdk-inflater false --gcs-max-retries 20 --gcs-project-for-requester-pays --disable-tool-default-read-filters false --max-read-length 2147483647 --min-read-length 30 --minimum-mapping-quality 20 --disable-tool-default-annotations false --enable-all-annotations false",Version="4.6.2.0",Date="February 2, 2026, 12:29:21?AM GMT"> ##INFO=<ID=AS_SB_TABLE,Number=1,Type=String,Description="Allele-specific forward/reverse read counts for strand bias tests. Includes the reference and alleles separated by |."> ##INFO=<ID=AS_UNIQ_ALT_READ_COUNT,Number=A,Type=Integer,Description="Number of reads with unique start and mate end positions for each alt at a variant site"> ##INFO=<ID=CONTQ,Number=1,Type=Float,Description="Phred-scaled qualities that alt allele are not due to contamination"> ##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered"> -##INFO=<ID=ECNT,Number=1,Type=Integer,Description="Number of events in this haplotype"> +##INFO=<ID=ECNT,Number=1,Type=Integer,Description="Number of potential somatic events in the assembly region"> +##INFO=<ID=ECNTH,Number=A,Type=Integer,Description="Number of somatic events in best supporting haplotype for each alt allele"> ##INFO=<ID=GERMQ,Number=1,Type=Integer,Description="Phred-scaled quality that alt alleles are not germline variants"> -##INFO=<ID=MBQ,Number=R,Type=Integer,Description="median base quality"> -##INFO=<ID=MFRL,Number=R,Type=Integer,Description="median fragment length"> -##INFO=<ID=MMQ,Number=R,Type=Integer,Description="median mapping quality"> +##INFO=<ID=MBQ,Number=R,Type=Integer,Description="median base quality by allele"> +##INFO=<ID=MFRL,Number=R,Type=Integer,Description="median fragment length by allele"> +##INFO=<ID=MMQ,Number=R,Type=Integer,Description="median mapping quality by allele"> ##INFO=<ID=MPOS,Number=A,Type=Integer,Description="median distance from end of read"> -##INFO=<ID=NALOD,Number=A,Type=Float,Description="Negative log 10 odds of artifact in normal with same allele fraction as tumor"> +##INFO=<ID=NALOD,Number=A,Type=Float,Description="Log 10 odds of artifact in normal with same allele fraction as tumor"> ##INFO=<ID=NCount,Number=1,Type=Integer,Description="Count of N bases in the pileup"> ##INFO=<ID=NLOD,Number=A,Type=Float,Description="Normal log 10 likelihood ratio of diploid het or hom alt genotypes"> ##INFO=<ID=OCM,Number=1,Type=Integer,Description="Number of alt reads whose original alignment doesn't match the current contig."> @@ -42,85 +44,85 @@ ##source=Mutect2 ##tumor_sample=SRR8525881 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SRR8525881 -K03455 4861 . A G . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=13;MBQ=0,37;MFRL=0,400;MMQ=60,60;MPOS=10;POPAF=7.30;TLOD=3.88 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:0,1:0.667:1:0,1:0,0:0,0,1,0 -K03455 4918 . G A . . AS_SB_TABLE=4,1|1,5;DP=11;ECNT=13;MBQ=35,32;MFRL=299,328;MMQ=60,60;MPOS=19;POPAF=7.30;TLOD=17.13 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:5,6:0.538:11:2,1:3,3:4,1,1,5 -K03455 4923 . A G . . AS_SB_TABLE=0,0|6,6;DP=12;ECNT=13;MBQ=0,33;MFRL=0,301;MMQ=60,60;MPOS=10;POPAF=7.30;TLOD=53.71 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:0,12:0.929:12:0,4:0,6:0,0,6,6 -K03455 4949 . G A . . AS_SB_TABLE=3,3|5,6;DP=17;ECNT=13;MBQ=38,37;MFRL=281,293;MMQ=60,60;MPOS=31;POPAF=7.30;TLOD=44.63 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:6,11:0.667:17:2,3:2,7:0|1:4949_G_A:4949:3,3,5,6 -K03455 4952 . C T . . AS_SB_TABLE=3,3|5,6;DP=19;ECNT=13;MBQ=25,37;MFRL=281,293;MMQ=60,60;MPOS=34;POPAF=7.30;TLOD=44.61 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:6,11:0.667:17:2,3:2,8:0|1:4949_G_A:4949:3,3,5,6 -K03455 4988 . T C . . AS_SB_TABLE=15,13|4,4;DP=36;ECNT=13;MBQ=34,35;MFRL=254,290;MMQ=60,60;MPOS=38;POPAF=7.30;TLOD=23.46 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:28,8:0.229:36:10,4:14,3:15,13,4,4 -K03455 4991 . T C . . AS_SB_TABLE=16,15|3,2;DP=36;ECNT=13;MBQ=33,36;MFRL=264,238;MMQ=60,60;MPOS=17;POPAF=7.30;TLOD=12.68 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:31,5:0.171:36:13,2:17,2:16,15,3,2 -K03455 4996 . AC GA . . AS_SB_TABLE=17,16|3,3;DP=40;ECNT=13;MBQ=34,26;MFRL=260,256;MMQ=60,60;MPOS=21;POPAF=7.30;TLOD=12.38 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:33,6:0.161:39:11,2:15,3:17,16,3,3 -K03455 4997 . C T,A . . AS_SB_TABLE=6,5|4,3|10,10;DP=40;ECNT=13;MBQ=20,35,38;MFRL=278,158,261;MMQ=60,60,60;MPOS=14,31;POPAF=7.30,7.30;TLOD=21.98,46.07 GT:AD:AF:DP:F1R2:F2R1:SB 0/1/2:11,7,20:0.187,0.536:38:6,2,7:3,4,13:6,5,14,13 -K03455 5015 . A G . . AS_SB_TABLE=6,8|16,17;DP=49;ECNT=13;MBQ=27,37;MFRL=245,251;MMQ=60,60;MPOS=32;POPAF=7.30;TLOD=138.05 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:14,33:0.728:47:7,9:6,22:6,8,16,17 -K03455 5018 . A G . . AS_SB_TABLE=18,23|4,4;DP=49;ECNT=13;MBQ=34,20;MFRL=260,194;MMQ=60,60;MPOS=33;POPAF=7.30;TLOD=21.59 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:41,8:0.173:49:13,2:22,5:18,23,4,4 -K03455 5027 . G A . . AS_SB_TABLE=18,23|4,7;DP=52;ECNT=13;MBQ=37,20;MFRL=260,158;MMQ=60,60;MPOS=35;POPAF=7.30;TLOD=33.61 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:41,11:0.208:52:14,2:24,8:0|1:5027_G_A:5027:18,23,4,7 -K03455 5036 . G A . . AS_SB_TABLE=18,22|4,7;DP=52;ECNT=13;MBQ=34,20;MFRL=259,158;MMQ=60,60;MPOS=38;POPAF=7.30;TLOD=33.71 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:40,11:0.212:51:13,2:26,8:0|1:5027_G_A:5027:18,22,4,7 -K03455 5076 . A G . . AS_SB_TABLE=11,36|1,8;DP=56;ECNT=29;MBQ=37,20;MFRL=260,190;MMQ=60,60;MPOS=49;POPAF=7.30;TLOD=27.26 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:47,9:0.173:56:15,1:29,8:0|1:5076_A_G:5076:11,36,1,8 -K03455 5098 . A G . . AS_SB_TABLE=1,11|10,40;DP=63;ECNT=29;MBQ=20,33;MFRL=198,269;MMQ=60,60;MPOS=32;POPAF=7.30;TLOD=196.26 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:12,50:0.785:62:0,11:10,27:1,11,10,40 -K03455 5099 . C T . . AS_SB_TABLE=10,41|1,10;DP=63;ECNT=29;MBQ=34,20;MFRL=260,190;MMQ=60,60;MPOS=36;POPAF=7.30;TLOD=33.93 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:51,11:0.196:62:10,1:33,8:0|1:5076_A_G:5076:10,41,1,10 -K03455 5121 . C T . . AS_SB_TABLE=7,39|4,13;DP=63;ECNT=29;MBQ=26,20;MFRL=246,260;MMQ=60,60;MPOS=30;POPAF=7.30;TLOD=57.26 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:46,17:0.250:63:8,6:34,9:7,39,4,13 -K03455 5130 . TG CA . . AS_SB_TABLE=3,13|3,37;DP=56;ECNT=29;MBQ=27,37;MFRL=218,249;MMQ=60,60;MPOS=32;POPAF=7.30;TLOD=170.80 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:16,40:0.738:56:5,6:9,32:3,13,3,37 -K03455 5131 . G A . . AS_SB_TABLE=0,1|3,13;DP=56;ECNT=29;MBQ=32,20;MFRL=206,216;MMQ=60,60;MPOS=31;POPAF=7.30;TLOD=56.78 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:1,16:0.946:17:0,4:1,9:0,1,3,13 -K03455 5133 . T C . . AS_SB_TABLE=5,34|0,13;DP=52;ECNT=29;MBQ=33,33;MFRL=278,222;MMQ=60,60;MPOS=36;POPAF=7.30;TLOD=42.34 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:39,13:0.280:52:7,1:26,11:0|1:5133_T_C:5133:5,34,0,13 -K03455 5137 . GG AA,AG . . AS_SB_TABLE=3,13|1,21|0,13;DP=51;ECNT=29;MBQ=32,39,39;MFRL=218,320,222;MMQ=60,60,60;MPOS=34,39;POPAF=7.30,7.30;TLOD=86.50,42.93 GT:AD:AF:DP:F1R2:F2R1:SB 0/1/2:16,22,13:0.452,0.274:51:5,4,1:9,17,10:3,13,1,34 -K03455 5146 . AGG A . . AS_SB_TABLE=4,32|0,12;DP=48;ECNT=29;MBQ=37,37;MFRL=286,219;MMQ=60,60;MPOS=43;POPAF=7.30;RPA=4,2;RU=G;STR;TLOD=39.62 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:36,12:0.276:48:8,1:25,11:0|1:5133_T_C:5133:4,32,0,12 -K03455 5147 . G A . . AS_SB_TABLE=3,12|1,20;DP=48;ECNT=29;MBQ=20,37;MFRL=229,331;MMQ=60,60;MPOS=36;POPAF=7.30;TLOD=83.42 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:15,21:0.640:36:5,3:9,14:0|1:5147_G_A:5147:3,12,1,20 -K03455 5149 . G A . . AS_SB_TABLE=3,42|1,1;DP=47;ECNT=29;MBQ=36,18;MFRL=257,64;MMQ=60,60;MPOS=13;POPAF=7.30;TLOD=4.60 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:45,2:0.043:47:7,0:30,1:3,42,1,1 -K03455 5153 . GGTTT G . . AS_SB_TABLE=3,28|0,12;DP=43;ECNT=29;MBQ=35,37;MFRL=278,219;MMQ=60,60;MPOS=50;POPAF=7.30;TLOD=40.38 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:31,12:0.309:43:7,1:22,11:0|1:5133_T_C:5133:3,28,0,12 -K03455 5155 . T C . . AS_SB_TABLE=3,11|0,16;DP=42;ECNT=29;MBQ=27,38;MFRL=221,315;MMQ=60,60;MPOS=56;POPAF=7.30;TLOD=62.97 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:14,16:0.601:30:5,2:8,13:0|1:5147_G_A:5147:3,11,0,16 -K03455 5156 . T A . . AS_SB_TABLE=1,17|2,10;DP=42;ECNT=29;MBQ=37,35;MFRL=296,269;MMQ=60,60;MPOS=15;POPAF=7.30;TLOD=43.10 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:18,12:0.365:30:2,5:16,7:0|1:5156_T_A:5156:1,17,2,10 -K03455 5157 . T G,C . . AS_SB_TABLE=2,10|0,16|1,1;DP=42;ECNT=29;MBQ=28,37,20;MFRL=269,315,64;MMQ=60,60,60;MPOS=56,5;POPAF=7.30,7.30;TLOD=63.04,5.63 GT:AD:AF:DP:F1R2:F2R1:SB 0/1/2:12,16,2:0.584,0.061:30:5,2,0:7,14,2:2,10,1,17 -K03455 5169 . C T . . AS_SB_TABLE=1,19|1,10;DP=31;ECNT=29;MBQ=38,32;MFRL=275,190;MMQ=60,60;MPOS=45;POPAF=7.30;TLOD=37.40 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:20,11:0.355:31:2,4:17,7:1,19,1,10 -K03455 5175 . A T . . AS_SB_TABLE=0,15|1,12;DP=28;ECNT=29;MBQ=28,38;MFRL=222,293;MMQ=60,60;MPOS=55;POPAF=7.30;TLOD=52.25 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:15,13:0.448:28:3,2:10,11:0|1:5147_G_A:5147:0,15,1,12 -K03455 5177 . G C . . AS_SB_TABLE=1,16|0,10;DP=27;ECNT=29;MBQ=37,35;MFRL=293,219;MMQ=60,60;MPOS=52;POPAF=7.30;TLOD=36.84 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:17,10:0.393:27:4,1:12,9:0|1:5133_T_C:5133:1,16,0,10 -K03455 5179 . CC AA,AC . . AS_SB_TABLE=0,4|1,11|0,10;DP=26;ECNT=29;MBQ=38,38,34;MFRL=339,296,219;MMQ=60,60,60;MPOS=51,61;POPAF=7.30,7.30;TLOD=48.82,37.25 GT:AD:AF:DP:F1R2:F2R1:SB 0/1/2:4,12,10:0.429,0.393:26:2,2,1:2,10,7:0,4,1,21 -K03455 5189 . G A . . AS_SB_TABLE=1,12|1,11;DP=25;ECNT=29;MBQ=39,39;MFRL=222,296;MMQ=60,60;MPOS=41;POPAF=7.30;TLOD=48.64 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:13,12:0.462:25:4,2:9,10:1,12,1,11 -K03455 5190 . A G . . AS_SB_TABLE=1,19|1,4;DP=25;ECNT=29;MBQ=39,20;MFRL=252,278;MMQ=60,60;MPOS=62;POPAF=7.30;TLOD=15.35 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:20,5:0.231:25:3,2:17,2:0|1:5156_T_A:5156:1,19,1,4 -K03455 5196 . T C . . AS_SB_TABLE=1,20|1,3;DP=25;ECNT=29;MBQ=38,20;MFRL=246,339;MMQ=60,60;MPOS=55;POPAF=7.30;TLOD=6.08 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:21,4:0.191:25:3,3:18,1:1,20,1,3 -K03455 5220 . G A . . AS_SB_TABLE=2,14|0,7;DP=23;ECNT=29;MBQ=37,37;MFRL=286,222;MMQ=60,60;MPOS=25;POPAF=7.30;TLOD=24.08 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:16,7:0.344:23:5,1:11,6:0|1:5220_G_A:5220:2,14,0,7 -K03455 5223 . T A . . AS_SB_TABLE=1,16|1,4;DP=22;ECNT=29;MBQ=37,37;MFRL=257,278;MMQ=60,60;MPOS=29;POPAF=7.30;TLOD=17.16 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:17,5:0.269:22:2,3:14,2:0|1:5223_T_A:5223:1,16,1,4 -K03455 5226 . T C . . AS_SB_TABLE=1,15|1,5;DP=22;ECNT=29;MBQ=34,35;MFRL=268,253;MMQ=60,60;MPOS=23;POPAF=7.30;TLOD=12.23 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:16,6:0.231:22:4,1:12,5:1,15,1,5 -K03455 5230 . T C . . AS_SB_TABLE=1,15|1,4;DP=21;ECNT=29;MBQ=33,38;MFRL=275,278;MMQ=60,60;MPOS=22;POPAF=7.30;TLOD=17.08 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:16,5:0.281:21:2,3:13,2:0|1:5223_T_A:5223:1,15,1,4 -K03455 5233 . G A . . AS_SB_TABLE=2,9|0,5;DP=16;ECNT=29;MBQ=38,38;MFRL=293,216;MMQ=60,60;MPOS=17;POPAF=7.30;TLOD=17.95 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:11,5:0.369:16:3,0:7,5:0|1:5220_G_A:5220:2,9,0,5 -K03455 5236 . A G . . AS_SB_TABLE=0,5|2,9;DP=16;ECNT=29;MBQ=37,38;MFRL=216,293;MMQ=60,60;MPOS=14;POPAF=7.30;TLOD=40.42 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:5,11:0.631:16:0,4:5,6:0,5,2,9 -K03455 5240 . C T . . AS_SB_TABLE=2,10|0,3;DP=15;ECNT=29;MBQ=37,37;MFRL=250,162;MMQ=60,60;MPOS=5;POPAF=7.30;TLOD=9.14 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:12,3:0.250:15:3,0:8,3:2,10,0,3 -K03455 6822 . GT AC . . AS_SB_TABLE=0,0|2,2;DP=4;ECNT=1;MBQ=0,38;MFRL=0,117;MMQ=60,60;MPOS=55;POPAF=7.30;TLOD=7.34 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:0,4:0.750:4:0,0:0,4:0,0,2,2 -K03455 6902 . A C . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=65;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:6902_A_C:6902:0,0,0,1 -K03455 6905 . A G . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=62;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:6902_A_C:6902:0,0,0,1 -K03455 6911 . T C . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=56;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:6902_A_C:6902:0,0,0,1 -K03455 6917 . G A . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=50;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:6902_A_C:6902:0,0,0,1 -K03455 6920 . G A . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=47;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:6902_A_C:6902:0,0,0,1 -K03455 6923 . C T . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=44;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:6902_A_C:6902:0,0,0,1 -K03455 6931 . C A . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=36;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:6902_A_C:6902:0,0,0,1 -K03455 6936 . C G . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=31;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:6902_A_C:6902:0,0,0,1 -K03455 7141 . GAATCC G . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;MBQ=0,0;MFRL=0,310;MMQ=60,60;MPOS=50;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,0:0|1:7141_GAATCC_G:7141:0,0,0,1 -K03455 7149 . A G . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;MBQ=0,15;MFRL=0,310;MMQ=60,60;MPOS=7;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,0:0|1:7141_GAATCC_G:7141:0,0,0,1 -K03455 7151 . C G . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;MBQ=0,38;MFRL=0,310;MMQ=60,60;MPOS=9;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,1:0,0:0|1:7141_GAATCC_G:7141:0,0,0,1 -K03455 7154 . G T . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;MBQ=0,24;MFRL=0,310;MMQ=60,60;MPOS=12;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,1:0,0:0|1:7141_GAATCC_G:7141:0,0,0,1 -K03455 7156 . G T . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;MBQ=0,25;MFRL=0,310;MMQ=60,60;MPOS=14;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,1:0,0:0|1:7141_GAATCC_G:7141:0,0,0,1 -K03455 7163 . A C . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;MBQ=0,13;MFRL=0,310;MMQ=60,60;MPOS=21;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:0,1:0.667:1:0,0:0,0:0,0,0,1 -K03455 7372 . T C . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=2;MBQ=0,34;MFRL=0,451;MMQ=60,60;MPOS=25;POPAF=7.30;TLOD=3.58 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:7372_T_C:7372:0,0,0,1 -K03455 7392 . C T . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=2;MBQ=0,32;MFRL=0,451;MMQ=60,60;MPOS=5;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:7372_T_C:7372:0,0,0,1 -K03455 7441 . A ACCT . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=23;MBQ=0,39;MFRL=0,486;MMQ=60,60;MPOS=77;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:7441_A_ACCT:7441:0,0,0,1 -K03455 7443 . A AGTG . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=23;MBQ=0,39;MFRL=0,486;MMQ=60,60;MPOS=82;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:7441_A_ACCT:7441:0,0,0,1 -K03455 7449 . G A . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=23;MBQ=0,39;MFRL=0,486;MMQ=60,60;MPOS=91;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:7441_A_ACCT:7441:0,0,0,1 -K03455 7452 . GGA G . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=23;MBQ=0,39;MFRL=0,486;MMQ=60,60;MPOS=94;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:7441_A_ACCT:7441:0,0,0,1 -K03455 7455 . A ATG . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=23;MBQ=0,39;MFRL=0,486;MMQ=60,60;MPOS=95;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:7441_A_ACCT:7441:0,0,0,1 -K03455 7457 . TGA T . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=23;MBQ=0,39;MFRL=0,486;MMQ=60,60;MPOS=99;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:7441_A_ACCT:7441:0,0,0,1 -K03455 7460 . CA C . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=23;MBQ=0,37;MFRL=0,486;MMQ=60,60;MPOS=100;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:7441_A_ACCT:7441:0,0,0,1 -K03455 7468 . CC TA . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=107;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,1:0|1:7441_A_ACCT:7441:0,0,0,2 -K03455 7478 . C T . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=117;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,2:0|1:7441_A_ACCT:7441:0,0,0,2 -K03455 7491 . A T . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=118;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,2:0|1:7441_A_ACCT:7441:0,0,0,2 -K03455 7494 . A G . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=115;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,2:0|1:7441_A_ACCT:7441:0,0,0,2 -K03455 7508 . GA AG . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=101;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,2:0|1:7441_A_ACCT:7441:0,0,0,2 -K03455 7541 . C CGA . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=68;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,2:0|1:7541_C_CGA:7541:0,0,0,2 -K03455 7542 . AGT A . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=65;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,2:0|1:7541_C_CGA:7541:0,0,0,2 -K03455 7548 . C A . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=61;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,2:0|1:7541_C_CGA:7541:0,0,0,2 -K03455 7555 . GA AT . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=54;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,2:0|1:7541_C_CGA:7541:0,0,0,2 -K03455 7560 . TC GT . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,38;MFRL=0,586;MMQ=60,50;MPOS=49;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,2:0|1:7541_C_CGA:7541:0,0,0,2 -K03455 7568 . T C . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=41;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,2:0|1:7541_C_CGA:7541:0,0,0,2 -K03455 7571 . T C . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=38;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,2:0|1:7541_C_CGA:7541:0,0,0,2 -K03455 7581 . C A . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=28;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,2:0|1:7541_C_CGA:7541:0,0,0,2 -K03455 7584 . T C . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=25;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,2:0|1:7541_C_CGA:7541:0,0,0,2 -K03455 7603 . A AGGG . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,37;MFRL=0,586;MMQ=60,50;MPOS=6;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,2:0|1:7541_C_CGA:7541:0,0,0,2 -K03455 7604 . T G . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,33;MFRL=0,586;MMQ=60,50;MPOS=2;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,1:0|1:7541_C_CGA:7541:0,0,0,2 +K03455 4861 . A G . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;ECNTH=10;MBQ=0,37;MFRL=0,400;MMQ=60,60;MPOS=10;POPAF=7.30;TLOD=3.88 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:0,1:0.667:1:0,1:0,0:0,1:0,0,1,0 +K03455 4918 . G A . . AS_SB_TABLE=4,1|1,4;DP=11;ECNT=14;ECNTH=5;MBQ=37,32;MFRL=260,331;MMQ=60,60;MPOS=19;POPAF=7.30;TLOD=13.33 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:5,5:0.499:10:2,1:3,3:5,5:4,1,1,4 +K03455 4923 . A G . . AS_SB_TABLE=0,0|6,6;DP=12;ECNT=14;ECNTH=5;MBQ=0,33;MFRL=0,284;MMQ=60,60;MPOS=16;POPAF=7.30;TLOD=52.89 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:0,12:0.929:12:0,4:0,6:0,12:0,0,6,6 +K03455 4949 . G A . . AS_SB_TABLE=3,3|4,6;DP=16;ECNT=14;ECNTH=5;MBQ=38,38;MFRL=293,258;MMQ=60,60;MPOS=32;POPAF=7.30;TLOD=39.87 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:6,10:0.611:16:2,3:2,6:6,10:0|1:4949_G_A:4949:3,3,4,6 +K03455 4952 . C T . . AS_SB_TABLE=3,3|4,6;DP=18;ECNT=14;ECNTH=5;MBQ=33,37;MFRL=293,258;MMQ=60,60;MPOS=35;POPAF=7.30;TLOD=39.85 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:6,10:0.611:16:2,3:3,7:6,10:0|1:4949_G_A:4949:3,3,4,6 +K03455 4988 . T C . . AS_SB_TABLE=10,12|4,3;DP=29;ECNT=14;ECNTH=5;MBQ=36,36;MFRL=249,301;MMQ=60,60;MPOS=37;POPAF=7.30;TLOD=17.26 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:22,7:0.267:29:7,4:11,2:20,7:10,12,4,3 +K03455 4991 . T C . . AS_SB_TABLE=12,14|2,1;DP=29;ECNT=14;ECNTH=7;MBQ=36,33;MFRL=262,229;MMQ=60,60;MPOS=60;POPAF=7.30;TLOD=6.20 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:26,3:0.137:29:11,1:12,2:24,3:12,14,2,1 +K03455 4996 . AC GA . . AS_SB_TABLE=11,13|3,3;DP=31;ECNT=14;ECNTH=6;MBQ=36,26;MFRL=262,256;MMQ=60,60;MPOS=21;POPAF=7.30;TLOD=12.04 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:24,6:0.199:30:8,2:10,2:23,5:11,13,3,3 +K03455 4997 . C T,A . . AS_SB_TABLE=5,5|2,1|7,10;DP=31;ECNT=14;ECNTH=7,6;MBQ=20,31,38;MFRL=282,229,251;MMQ=60,60,60;MPOS=54,31;POPAF=7.30,7.30;TLOD=6.97,36.41 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1/2:10,3,17:0.130,0.542:30:4,1,7:3,2,9:9,3,16:5,5,9,11 +K03455 5015 . A G . . AS_SB_TABLE=5,8|12,16;DP=43;ECNT=14;ECNTH=6;MBQ=33,37;MFRL=260,251;MMQ=60,60;MPOS=30;POPAF=7.30;TLOD=104.33 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:13,28:0.700:41:5,8:5,19:11,27:5,8,12,16 +K03455 5018 . A G . . AS_SB_TABLE=15,25|2,1;DP=43;ECNT=14;ECNTH=10;MBQ=34,20;MFRL=259,229;MMQ=60,60;MPOS=44;POPAF=7.30;TLOD=5.47 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:40,3:0.094:43:11,1:19,2:37,3:15,25,2,1 +K03455 5027 . G A . . AS_SB_TABLE=14,28|3,1;DP=47;ECNT=14;ECNTH=10;MBQ=33,29;MFRL=254,254;MMQ=60,60;MPOS=43;POPAF=7.30;TLOD=8.72 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:42,4:0.116:46:11,2:22,2:37,4:14,28,3,1 +K03455 5036 . G A . . AS_SB_TABLE=16,28|2,1;DP=47;ECNT=14;ECNTH=10;MBQ=32,20;MFRL=251,229;MMQ=60,60;MPOS=30;POPAF=7.30;TLOD=5.52 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:44,3:0.092:47:12,1:23,2:38,3:16,28,2,1 +K03455 5076 . A G . . AS_SB_TABLE=9,38|1,6;DP=54;ECNT=33;ECNTH=13;MBQ=37,20;MFRL=260,158;MMQ=60,60;MPOS=54;POPAF=7.30;TLOD=21.83 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:47,7:0.140:54:14,0:24,5:42,6:0|1:5076_A_G:5076:9,38,1,6 +K03455 5098 . A G . . AS_SB_TABLE=1,10|9,41;DP=62;ECNT=33;ECNTH=11;MBQ=32,33;MFRL=206,269;MMQ=60,60;MPOS=32;POPAF=7.30;TLOD=196.84 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:11,50:0.799:61:1,10:8,23:10,43:1,10,9,41 +K03455 5099 . C T . . AS_SB_TABLE=9,43|1,8;DP=62;ECNT=33;ECNTH=13;MBQ=33,20;MFRL=269,162;MMQ=60,60;MPOS=48;POPAF=7.30;TLOD=28.29 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:52,9:0.163:61:9,0:27,6:45,8:0|1:5076_A_G:5076:9,43,1,8 +K03455 5121 . C T . . AS_SB_TABLE=6,39|4,13;DP=62;ECNT=33;ECNTH=10;MBQ=32,30;MFRL=251,260;MMQ=60,60;MPOS=30;POPAF=7.30;TLOD=58.62 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:45,17:0.255:62:7,5:29,6:40,13:6,39,4,13 +K03455 5130 . TG CA . . AS_SB_TABLE=3,14|4,35;DP=56;ECNT=33;ECNTH=11;MBQ=33,37;MFRL=229,251;MMQ=60,60;MPOS=32;POPAF=7.30;TLOD=168.50 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:17,39:0.717:56:4,6:6,27:14,37:3,14,4,35 +K03455 5131 . G A . . AS_SB_TABLE=0,1|3,13;DP=56;ECNT=33;ECNTH=10;MBQ=32,20;MFRL=206,216;MMQ=60,60;MPOS=31;POPAF=7.30;TLOD=58.17 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:1,16:0.946:17:0,3:1,6:1,13:0,1,3,13 +K03455 5133 . T C . . AS_SB_TABLE=4,36|2,10;DP=52;ECNT=33;ECNTH=11;MBQ=37,37;MFRL=280,219;MMQ=60,60;MPOS=33;POPAF=7.30;TLOD=49.54 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:40,12:0.260:52:7,1:22,9:36,12:0|1:5133_T_C:5133:4,36,2,10 +K03455 5137 . GG AA,AG . . AS_SB_TABLE=3,13|0,23|2,10;DP=51;ECNT=33;ECNTH=11,11;MBQ=32,39,39;MFRL=218,309,219;MMQ=60,60,60;MPOS=36,36;POPAF=7.30,7.30;TLOD=91.94,49.94 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1/2:16,23,12:0.471,0.255:51:3,3,1:6,16,8:13,23,12:3,13,2,33 +K03455 5146 . AGG A . . AS_SB_TABLE=3,34|2,9;DP=48;ECNT=33;ECNTH=11;MBQ=38,38;MFRL=281,216;MMQ=60,60;MPOS=31;POPAF=7.30;RPA=4,2;RU=G;STR;TLOD=46.83 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:37,11:0.255:48:7,1:21,9:34,11:0|1:5133_T_C:5133:3,34,2,9 +K03455 5147 . G A . . AS_SB_TABLE=3,12|0,22;DP=48;ECNT=33;ECNTH=11;MBQ=20,37;MFRL=229,315;MMQ=60,60;MPOS=30;POPAF=7.30;TLOD=88.89 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:15,22:0.640:37:3,4:6,13:12,22:3,12,0,22 +K03455 5148 . G GAAAAAT . . AS_SB_TABLE=3,33|2,9;DP=47;ECNT=33;ECNTH=11;MBQ=37,0;MFRL=280,216;MMQ=60,60;MPOS=30;POPAF=7.30;TLOD=46.96 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:36,11:0.261:47:6,0:20,0:33,11:0|1:5133_T_C:5133:3,33,2,9 +K03455 5149 . G A . . AS_SB_TABLE=4,41|1,1;DP=47;ECNT=33;ECNTH=11;MBQ=37,18;MFRL=260,64;MMQ=60,60;MPOS=13;POPAF=7.30;TLOD=4.60 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:45,2:0.043:47:6,0:25,0:43,1:4,41,1,1 +K03455 5153 . GGTTT G . . AS_SB_TABLE=3,30|2,11;DP=46;ECNT=33;ECNTH=11;MBQ=34,38;MFRL=278,162;MMQ=60,60;MPOS=33;POPAF=7.30;TLOD=47.60 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:33,13:0.281:46:5,1:18,9:30,11:0|1:5133_T_C:5133:3,30,2,11 +K03455 5155 . T C . . AS_SB_TABLE=3,11|0,17;DP=45;ECNT=33;ECNTH=11;MBQ=27,37;MFRL=221,299;MMQ=60,60;MPOS=55;POPAF=7.30;TLOD=68.15 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:14,17:0.601:31:3,2:5,12:11,17:0|1:5155_T_C:5155:3,11,0,17 +K03455 5156 . T A . . AS_SB_TABLE=1,19|2,10;DP=45;ECNT=33;ECNTH=10;MBQ=38,36;MFRL=287,269;MMQ=60,60;MPOS=15;POPAF=7.30;TLOD=42.93 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:20,12:0.354:32:3,3:14,5:19,10:0|1:5156_T_A:5156:1,19,2,10 +K03455 5157 . T G,C . . AS_SB_TABLE=2,11|0,17|1,1;DP=45;ECNT=33;ECNTH=11,11;MBQ=37,37,20;MFRL=278,299,64;MMQ=60,60,60;MPOS=54,5;POPAF=7.30,7.30;TLOD=67.92,5.59 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1/2:13,17,2:0.565,0.059:32:4,2,0:5,13,1:11,17,1:2,11,1,18 +K03455 5169 . C T . . AS_SB_TABLE=1,21|3,8;DP=33;ECNT=33;ECNTH=10;MBQ=38,20;MFRL=252,100;MMQ=60,60;MPOS=49;POPAF=7.30;TLOD=33.24 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:22,11:0.290:33:2,2:16,4:21,8:1,21,3,8 +K03455 5175 . A T . . AS_SB_TABLE=2,14|1,13;DP=30;ECNT=33;ECNTH=11;MBQ=32,38;MFRL=199,275;MMQ=60,60;MPOS=55;POPAF=7.30;TLOD=57.70 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:16,14:0.483:30:2,2:9,9:14,13:0|1:5155_T_C:5155:2,14,1,13 +K03455 5177 . G C . . AS_SB_TABLE=1,17|2,9;DP=29;ECNT=33;ECNTH=11;MBQ=37,32;MFRL=286,162;MMQ=60,60;MPOS=57;POPAF=7.30;TLOD=41.57 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:18,11:0.357:29:2,1:10,8:17,9:0|1:5133_T_C:5133:1,17,2,9 +K03455 5179 . CC AA,AC . . AS_SB_TABLE=0,4|1,12|2,9;DP=28;ECNT=33;ECNTH=11,11;MBQ=38,38,20;MFRL=339,293,162;MMQ=60,60,60;MPOS=51,59;POPAF=7.30,7.30;TLOD=54.29,42.03 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1/2:4,13,11:0.464,0.357:28:1,1,1:2,8,6:4,12,9:0,4,3,21 +K03455 5189 . G A . . AS_SB_TABLE=3,11|1,11;DP=26;ECNT=33;ECNTH=11;MBQ=20,39;MFRL=199,296;MMQ=60,60;MPOS=41;POPAF=7.30;TLOD=49.94 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:14,12:0.480:26:3,1:8,8:12,11:3,11,1,11 +K03455 5190 . A G . . AS_SB_TABLE=3,18|1,4;DP=26;ECNT=33;ECNTH=10;MBQ=38,20;MFRL=246,278;MMQ=60,60;MPOS=62;POPAF=7.30;TLOD=15.46 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:21,5:0.240:26:2,1:14,2:18,5:0|1:5156_T_A:5156:3,18,1,4 +K03455 5196 . T C . . AS_SB_TABLE=3,19|1,3;DP=26;ECNT=33;ECNTH=10;MBQ=37,20;MFRL=234,339;MMQ=60,60;MPOS=55;POPAF=7.30;TLOD=6.18 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:22,4:0.198:26:2,2:15,1:19,4:3,19,1,3 +K03455 5220 . G A . . AS_SB_TABLE=1,14|0,7;DP=22;ECNT=33;ECNTH=11;MBQ=37,37;MFRL=293,216;MMQ=60,60;MPOS=25;POPAF=7.30;TLOD=24.54 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:15,7:0.348:22:2,0:9,5:14,7:1,14,0,7 +K03455 5223 . T A . . AS_SB_TABLE=1,17|0,4;DP=22;ECNT=33;ECNTH=10;MBQ=37,38;MFRL=252,339;MMQ=60,60;MPOS=29;POPAF=7.30;TLOD=12.88 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:18,4:0.217:22:1,1:11,2:17,4:0|1:5223_T_A:5223:1,17,0,4 +K03455 5226 . T C . . AS_SB_TABLE=0,16|1,5;DP=22;ECNT=33;ECNTH=11;MBQ=34,35;MFRL=268,253;MMQ=60,60;MPOS=23;POPAF=7.30;TLOD=15.73 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:16,6:0.261:22:1,1:10,4:16,5:0,16,1,5 +K03455 5230 . T C . . AS_SB_TABLE=1,16|0,4;DP=21;ECNT=33;ECNTH=10;MBQ=34,39;MFRL=257,339;MMQ=60,60;MPOS=22;POPAF=7.30;TLOD=12.99 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:17,4:0.227:21:1,1:10,2:16,4:0|1:5223_T_A:5223:1,16,0,4 +K03455 5233 . G A . . AS_SB_TABLE=1,9|0,6;DP=16;ECNT=33;ECNTH=11;MBQ=38,38;MFRL=312,189;MMQ=60,60;MPOS=15;POPAF=7.30;TLOD=21.55 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:10,6:0.412:16:2,0:6,4:9,6:1,9,0,6 +K03455 5236 . A G . . AS_SB_TABLE=0,6|1,9;DP=16;ECNT=33;ECNTH=10;MBQ=37,38;MFRL=189,312;MMQ=60,60;MPOS=14;POPAF=7.30;TLOD=39.55 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:6,10:0.588:16:0,2:4,5:6,9:0,6,1,9 +K03455 5240 . C T . . AS_SB_TABLE=1,10|0,3;DP=14;ECNT=33;ECNTH=13;MBQ=37,37;MFRL=278,162;MMQ=60,60;MPOS=5;POPAF=7.30;TLOD=9.35 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:11,3:0.267:14:2,0:7,2:10,3:1,10,0,3 +K03455 6822 . GT AC . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=1;ECNTH=1;MBQ=0,20;MFRL=0,117;MMQ=60,60;MPOS=79;POPAF=7.30;TLOD=8.52 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:0,2:0.750:2:0,0:0,2:0,2:0,0,0,2 +K03455 6902 . A C . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=13;ECNTH=13;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=65;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0,1:0|1:6902_A_C:6902:0,0,0,1 +K03455 6905 . A G . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=13;ECNTH=13;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=62;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0,1:0|1:6902_A_C:6902:0,0,0,1 +K03455 6911 . T C . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=13;ECNTH=13;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=56;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0,1:0|1:6902_A_C:6902:0,0,0,1 +K03455 6917 . G A . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=13;ECNTH=13;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=50;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0,1:0|1:6902_A_C:6902:0,0,0,1 +K03455 6920 . G A . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=13;ECNTH=13;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=47;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0,1:0|1:6902_A_C:6902:0,0,0,1 +K03455 6923 . C T . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=13;ECNTH=13;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=44;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0,1:0|1:6902_A_C:6902:0,0,0,1 +K03455 6931 . C A . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=13;ECNTH=13;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=36;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0,1:0|1:6902_A_C:6902:0,0,0,1 +K03455 6936 . C G . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=13;ECNTH=13;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=31;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0,1:0|1:6902_A_C:6902:0,0,0,1 +K03455 7141 . GAATCC G . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=13;ECNTH=5;MBQ=0,0;MFRL=0,310;MMQ=60,60;MPOS=50;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,0:0,1:0|1:7141_GAATCC_G:7141:0,0,0,1 +K03455 7149 . A G . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=13;ECNTH=5;MBQ=0,15;MFRL=0,310;MMQ=60,60;MPOS=7;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,0:0,1:0|1:7141_GAATCC_G:7141:0,0,0,1 +K03455 7151 . C G . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=13;ECNTH=5;MBQ=0,38;MFRL=0,310;MMQ=60,60;MPOS=9;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,1:0,0:0,1:0|1:7141_GAATCC_G:7141:0,0,0,1 +K03455 7154 . G T . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=13;ECNTH=5;MBQ=0,24;MFRL=0,310;MMQ=60,60;MPOS=12;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,1:0,0:0,1:0|1:7141_GAATCC_G:7141:0,0,0,1 +K03455 7156 . G T . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=13;ECNTH=5;MBQ=0,25;MFRL=0,310;MMQ=60,60;MPOS=14;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,1:0,0:0,1:0|1:7141_GAATCC_G:7141:0,0,0,1 +K03455 7372 . T C . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=2;ECNTH=2;MBQ=0,34;MFRL=0,451;MMQ=60,60;MPOS=25;POPAF=7.30;TLOD=3.58 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0,1:0|1:7372_T_C:7372:0,0,0,1 +K03455 7392 . C T . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=2;ECNTH=2;MBQ=0,32;MFRL=0,451;MMQ=60,60;MPOS=5;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0,1:0|1:7372_T_C:7372:0,0,0,1 +K03455 7441 . A ACCT . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=23;ECNTH=12;MBQ=0,39;MFRL=0,486;MMQ=60,60;MPOS=77;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0,1:0|1:7441_A_ACCT:7441:0,0,0,1 +K03455 7443 . A AGTG . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=23;ECNTH=12;MBQ=0,39;MFRL=0,486;MMQ=60,60;MPOS=82;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0,1:0|1:7441_A_ACCT:7441:0,0,0,1 +K03455 7449 . G A . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=23;ECNTH=12;MBQ=0,39;MFRL=0,486;MMQ=60,60;MPOS=91;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0,1:0|1:7441_A_ACCT:7441:0,0,0,1 +K03455 7452 . GGA G . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=23;ECNTH=12;MBQ=0,39;MFRL=0,486;MMQ=60,60;MPOS=94;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0,1:0|1:7441_A_ACCT:7441:0,0,0,1 +K03455 7455 . A ATG . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=23;ECNTH=12;MBQ=0,39;MFRL=0,486;MMQ=60,60;MPOS=95;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0,1:0|1:7441_A_ACCT:7441:0,0,0,1 +K03455 7457 . TGA T . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=23;ECNTH=12;MBQ=0,39;MFRL=0,486;MMQ=60,60;MPOS=99;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0,1:0|1:7441_A_ACCT:7441:0,0,0,1 +K03455 7460 . CA C . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=23;ECNTH=12;MBQ=0,37;MFRL=0,486;MMQ=60,60;MPOS=100;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0,1:0|1:7441_A_ACCT:7441:0,0,0,1 +K03455 7468 . CC TA . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;ECNTH=12;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=107;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,1:0,1:0|1:7441_A_ACCT:7441:0,0,0,2 +K03455 7478 . C T . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;ECNTH=12;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=117;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,1:0,1:0|1:7441_A_ACCT:7441:0,0,0,2 +K03455 7491 . A T . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;ECNTH=12;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=118;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,1:0,1:0|1:7441_A_ACCT:7441:0,0,0,2 +K03455 7494 . A G . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;ECNTH=12;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=115;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,1:0,1:0|1:7441_A_ACCT:7441:0,0,0,2 +K03455 7508 . GA AG . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;ECNTH=12;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=101;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,1:0,1:0|1:7441_A_ACCT:7441:0,0,0,2 +K03455 7541 . C CGA . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;ECNTH=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=68;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,1:0,1:0|1:7541_C_CGA:7541:0,0,0,2 +K03455 7542 . AGT A . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;ECNTH=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=65;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,1:0,1:0|1:7541_C_CGA:7541:0,0,0,2 +K03455 7548 . C A . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;ECNTH=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=61;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,1:0,1:0|1:7541_C_CGA:7541:0,0,0,2 +K03455 7555 . GA AT . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;ECNTH=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=54;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,1:0,1:0|1:7541_C_CGA:7541:0,0,0,2 +K03455 7560 . TC GT . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;ECNTH=23;MBQ=0,38;MFRL=0,586;MMQ=60,50;MPOS=49;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,1:0,1:0|1:7541_C_CGA:7541:0,0,0,2 +K03455 7568 . T C . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;ECNTH=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=41;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,1:0,1:0|1:7541_C_CGA:7541:0,0,0,2 +K03455 7571 . T C . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;ECNTH=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=38;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,1:0,1:0|1:7541_C_CGA:7541:0,0,0,2 +K03455 7581 . C A . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;ECNTH=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=28;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,1:0,1:0|1:7541_C_CGA:7541:0,0,0,2 +K03455 7584 . T C . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;ECNTH=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=25;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,1:0,1:0|1:7541_C_CGA:7541:0,0,0,2 +K03455 7603 . A AGGG . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;ECNTH=23;MBQ=0,37;MFRL=0,586;MMQ=60,50;MPOS=6;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,1:0,1:0|1:7541_C_CGA:7541:0,0,0,2 +K03455 7604 . T G . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;ECNTH=23;MBQ=0,33;MFRL=0,586;MMQ=60,50;MPOS=2;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,1:0,1:0|1:7541_C_CGA:7541:0,0,0,2